CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CRE29848
(
Caenorhabditis remanei
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
CRE29848
T085086_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.825
0.982
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.825
0.982
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE29848
C2H2 ZF
508
530
YACKDCNKTFGQLSNLKVHVRTH
CRE29848
C2H2 ZF
536
558
FKCEICTKEFTQLAHLQKHHLVH
CRE29848
C2H2 ZF
564
586
HRCDICDKRFSSTSNLKTHLRLH
CRE29848
C2H2 ZF
592
614
YTCDVCDAKFTQYVHLRLHKRLH
CRE29848
C2H2 ZF
620
641
FSCSTCGKKYISPSGLRTHWKT
Links
Other
C2H2 ZF
family TFs
Other
Caenorhabditis remanei
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy