DAPPUDRAFT_290567 (Daphnia pulex)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 DAPPUDRAFT_290567 T085372_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.793 0.966
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.793 0.966
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.793 0.966
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.793 0.966
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.793 0.966
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX70006 C2H2 ZF 278 298
EFX70006 C2H2 ZF 304 328
EFX70006 C2H2 ZF 334 358
EFX70006 C2H2 ZF 364 388

Links

Other C2H2 ZF family TFs
Other Daphnia pulex TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GB54250 Apis mellifera GB54250 I 0.825
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.807
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.807
TC010234 Tribolium castaneum TC010234 I 0.805
KGM_22387 Danaus plexippus KGM_22387 I 0.805
AGAP001291 Anopheles gambiae AGAP001291 I 0.802
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.802
NV11451 Nasonia vitripennis NV11451 I 0.801
GH23039 Drosophila grimshawi FBgn0130496 I 0.793
GG12590 Drosophila erecta FBgn0104878 I 0.793
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.793
GF18915 Drosophila ananassae FBgn0095929 I 0.793
GI10245 Drosophila mojavensis FBgn0133010 I 0.793
GK13239 Drosophila willistoni FBgn0215248 I 0.793
MDOA000052 Musca domestica MDOA000052 I 0.793
opa Drosophila melanogaster FBgn0003002 D 0.793
GD19752 Drosophila simulans FBgn0191241 I 0.793
GM10780 Drosophila sechellia FBgn0165726 I 0.793
GL21621 Drosophila persimilis FBgn0159214 I 0.793
GJ11051 Drosophila virilis FBgn0198317 I 0.793
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.792
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.792
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.792
zic6 Danio rerio ENSDARG00000071496 I 0.790
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.790
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.790
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.790
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.790
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.789
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.780
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.780
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.780
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.780
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.780
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.780
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.780
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.780
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.780
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.780
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.779
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.778
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.777
csin109208 Clonorchis sinensis csin109208 I 0.776
T265_00048 Opisthorchis viverrini T265_00048 I 0.776
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.775
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.772
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.772
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.770
TCLT_0000586501 Thelazia callipaeda TCLT_0000586501 I 0.770
WBGene00239980 Onchocerca volvulus WBGene00239980 I 0.770
XP_002153782.1 Hydra magnipapillata XP_002153782.1 I 0.768
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.768
ENSCING00000022318 Ciona intestinalis ENSCING00000022318 N 0.765
SSTP_0000201100 Strongyloides stercoralis SSTP_0000201100 I 0.763
SPAL_0001746600 Strongyloides papillosus SPAL_0001746600 I 0.763
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.763
SVE_0347600 Strongyloides venezuelensis SVE_0347600 I 0.763
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.762
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.761
macho1 Ciona intestinalis ENSCING00000007968 I 0.761
NEMVEDRAFT_v1g121215 Nematostella vectensis NEMVEDRAFT_v1g121215 I 0.756