CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
DAPPUDRAFT_331337
(
Daphnia pulex
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
DAPPUDRAFT_331337
T085408_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
hkb
M03710_2.00
Drosophila melanogaster
VTCACGCCYHHN
NDDRGGCGTGAB
SELEX
Nitta et al.(2015)
hkb_1
0.760
0.783
hkb
M06470_2.00
Drosophila melanogaster
TCACGCCYM
KRGGCGTGA
B1H
Mathelier et al.(2014)
MA0450.1
0.760
0.783
hkb
M06168_2.00
Drosophila melanogaster
TCACGCCYM
KRGGCGTGA
B1H
Zhu et al.(2011)
hkb_NAR_FBgn0001204
0.760
0.783
hkb
M09666_2.00
Drosophila melanogaster
YMACGCCCMY
RKGGGCGTKR
Misc
Kulakovskiy et al.(2009)
hkb
0.760
0.783
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFX67180
C2H2 ZF
258
280
FRCPHCQVAFSNNGQLKGHVRSH
EFX67180
C2H2 ZF
286
310
FKCDEESCGKTFTRNEELTRHKRIH
EFX67180
C2H2 ZF
316
338
FSCAVCCKRFGRRDHLKKHSRIH
Links
Other
C2H2 ZF
family TFs
Other
Daphnia pulex
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy