CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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EFV49300
(
Trichinella spiralis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
EFV49300
T085695_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sob
M03674_2.00
Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY
SELEX
Nitta et al.(2015)
sob_1
0.760
0.783
sob
M03675_2.00
Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN
SELEX
Nitta et al.(2015)
sob_2
0.760
0.783
sob
M06088_2.00
Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC
B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892
0.760
0.783
sob
M06089_2.00
Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV
B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892
0.760
0.783
bowl
M03676_2.00
Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC
SELEX
Nitta et al.(2015)
bowl_1
0.760
0.774
bowl
M03677_2.00
Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN
SELEX
Nitta et al.(2015)
bowl_2
0.760
0.774
bowl
M06090_2.00
Drosophila melanogaster
RCTWCYGK
MCRGWAGY
B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893
0.760
0.774
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFV49300
C2H2 ZF
146
168
FICKYCQRRFTKSYNLLIHERTH
EFV49300
C2H2 ZF
174
196
YSCEICGKAFRRQDHLRDHRYIH
EFV49300
C2H2 ZF
202
224
FKCDICGKGFCQSRTMQVHRILH
EFV49300
C2H2 ZF
230
252
LQCPKCNRTFNQRSNLKTHLFTH
EFV49300
C2H2 ZF
258
282
FACPKAGCERGFRRTCDLRRHLSMH
Links
Other
C2H2 ZF
family TFs
Other
Trichinella spiralis
TFs
69 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy