EFV49300 (Trichinella spiralis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 EFV49300 T085695_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
sob
M03674_2.00
Drosophila melanogaster
RCTACYGNRTTACGCV

BGCGTAAYNCRGTAGY
SELEX
Nitta et al.(2015)
sob_1
0.760 0.783
sob
M03675_2.00
Drosophila melanogaster
NGCGTAABNSNRGTAGY

RCTACYNSNVTTACGCN
SELEX
Nitta et al.(2015)
sob_2
0.760 0.783
sob
M06088_2.00
Drosophila melanogaster
GCTWCTGBDNBDV

BHVNHVCAGWAGC
B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892
0.760 0.783
sob
M06089_2.00
Drosophila melanogaster
BDGCTACYGKDBNN

NNVHMCRGTAGCHV
B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892
0.760 0.783
bowl
M03676_2.00
Drosophila melanogaster
GCGTAABACNRGKAGYN

NRCTMCYNGTVTTACGC
SELEX
Nitta et al.(2015)
bowl_1
0.760 0.774
bowl
M03677_2.00
Drosophila melanogaster
NGCTACYGTRTTACGCN

NGCGTAAYACRGTAGCN
SELEX
Nitta et al.(2015)
bowl_2
0.760 0.774
bowl
M06090_2.00
Drosophila melanogaster
RCTWCYGK

MCRGWAGY
B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893
0.760 0.774
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFV49300 C2H2 ZF 146 168
EFV49300 C2H2 ZF 174 196
EFV49300 C2H2 ZF 202 224
EFV49300 C2H2 ZF 230 252
EFV49300 C2H2 ZF 258 282

Links

Other C2H2 ZF family TFs
Other Trichinella spiralis TFs

Invalid Input OrderBy

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action