CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSAMXG00000004890
(
Astyanax mexicanus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSAMXG00000004890
T087115_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sr
M06072_2.00
Drosophila melanogaster
HVMCGCCCMCVYMH
DKRBGKGGGCGKBD
B1H
Zhu et al.(2011)
sr_SANGER_5_FBgn0003499
0.779
0.797
sr
M06073_2.00
Drosophila melanogaster
NNMCRCCCMCVHNN
NNDBGKGGGYGKNN
B1H
Zhu et al.(2011)
sr_SOLEXA_5_FBgn0003499
0.779
0.797
EGR4
M02889_2.00
Homo sapiens
NHMCGCCCACGCAHHN
NDDTGCGTGGGCGKDN
SELEX
Jolma et al.(2013)
EGR4_1
0.776
0.768
EGR4
M02890_2.00
Homo sapiens
NHMCGCCCACGCAHWH
DWDTGCGTGGGCGKDN
SELEX
Jolma et al.(2013)
EGR4_2
0.776
0.768
EGR4
M04461_2.00
Homo sapiens
HMCGCCCACGCAH
DTGCGTGGGCGKD
SELEX
Yin et al.(2017)
EGR4_eDBD_HT-SELEX
0.776
0.768
EGR4
M10216_2.00
Homo sapiens
MCRCCCACGCAW
WTGCGTGGGYGK
Transfac
Matys et al.(2006)
V$NGFIC_01
0.776
0.768
EGR4
M04462_2.00
Homo sapiens
HMCGCCCMCGCRH
DYGCGKGGGCGKD
SELEX
Yin et al.(2017)
EGR4_eDBD_Methyl-HT-SELEX
0.776
0.768
egrh-1
M00622_2.00
Caenorhabditis elegans
CSCCCMCR
YGKGGGSG
PBM
Narasimhan et al.(2015)
pTH9317
0.767
0.768
Egr3
M00776_2.00
Mus musculus
HHDCCCMCDN
NHGKGGGHDD
PBM
Weirauch et al.(2013)
pTH2820
0.757
0.783
EGR3
M02915_2.00
Homo sapiens
NHMCGCCCMCGCAHN
NDTGCGKGGGCGKDN
SELEX
Jolma et al.(2013)
EGR3_1
0.757
0.783
Egr3
M02931_2.00
Mus musculus
HMCGCCCACGCAHWN
NWDTGCGTGGGCGKD
SELEX
Jolma et al.(2013)
Egr3_1
0.757
0.783
EGR3
M04583_2.00
Homo sapiens
HMCGCCCACGCRH
DYGCGTGGGCGKD
SELEX
Yin et al.(2017)
EGR3_FL_HT-SELEX
0.757
0.783
EGR3
M08349_2.00
Homo sapiens
CDCCYCCDC
GHGGRGGHG
ChIP-seq
Schmitges et al.(2016)
Q06889_1-3.RCADE
0.757
0.783
EGR3
M10279_2.00
Homo sapiens
MCGCCYACGCWN
NWGCGTRGGCGK
Transfac
Matys et al.(2006)
V$EGR3_01
0.757
0.783
EGR3
M10280_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR3_Q3
0.757
0.783
EGR3
M10281_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR3_Q6
0.757
0.783
EGR3
M04584_2.00
Homo sapiens
NMCGCCCACGCRH
DYGCGTGGGCGKN
SELEX
Yin et al.(2017)
EGR3_FL_Methyl-HT-SELEX
0.757
0.783
Egr1
M01864_2.00
Mus musculus
CCCMCGYNN
NNRCGKGGG
PBM
Weirauch et al.(2014)
pTH5337
0.756
0.754
Egr1
M00375_2.00
Mus musculus
NCCYMCDNN
NNHGKRGGN
PBM
Berger et al.(2006)
Zif268
0.756
0.754
EGR1
M02883_2.00
Homo sapiens
NMCGCCCMCGCANN
NNTGCGKGGGCGKN
SELEX
Jolma et al.(2013)
EGR1_1
0.756
0.754
EGR1
M02884_2.00
Homo sapiens
HMCGCCCACGCAHW
WDTGCGTGGGCGKD
SELEX
Jolma et al.(2013)
EGR1_2
0.756
0.754
Egr1
M02932_2.00
Mus musculus
HHMCGCCCMCBCAHHH
DDDTGVGKGGGCGKDD
SELEX
Jolma et al.(2013)
Egr1_1
0.756
0.754
EGR1
M04437_2.00
Homo sapiens
NNCRCCCMCRCNN
NNGYGKGGGYGNN
SELEX
Yin et al.(2017)
EGR1_eDBD_HT-SELEX
0.756
0.754
Egr1
M05860_2.00
Mus musculus
NNMCRCCCMCGCN
NGCGKGGGYGKNN
SMiLE-seq
Isakova et al.(2017)
EGR1
0.756
0.754
EGR1
M07927_2.00
Homo sapiens
NVBNNNNBCCGCCCMCGCNB
VNGCGKGGGCGGVNNNNVBN
ChIP-seq
Gerstein et al.(2012)
GM12878_EGR1_HudsonAlpha
0.756
0.754
EGR1
M07928_2.00
Homo sapiens
BNCCGCCCMCGCNBB
VVNGCGKGGGCGGNV
ChIP-seq
Gerstein et al.(2012)
H1-hESC_EGR1_HudsonAlpha
0.756
0.754
EGR1
M07929_2.00
Homo sapiens
NNNNNNBNNCCRCCCMCGCN
NGCGKGGGYGGNNVNNNNNN
ChIP-seq
Gerstein et al.(2012)
K562_EGR1_HudsonAlpha
0.756
0.754
EGR1
M08882_2.00
Homo sapiens
BHNCCDCCCMCDCHBNB
VNVDGHGKGGGHGGNDV
Misc
Kulakovskiy et al.(2013)
EGR1_HUMAN.H11MO.0.A
0.756
0.754
Egr1
M08996_2.00
Mus musculus
YYCCRCCCMCGCNB
VNGCGKGGGYGGRR
Misc
Kulakovskiy et al.(2013)
EGR1_MOUSE.H11MO.0.A
0.756
0.754
EGR1
M09506_2.00
Homo sapiens
CRCCCMCRCA
TGYGKGGGYG
Misc
Heinz et al.(2010)
K562-Egr1_GSE32465
0.756
0.754
EGR1
M10188_2.00
Homo sapiens
MCGCCYACGCAW
WTGCGTRGGCGK
Transfac
Matys et al.(2006)
V$EGR1_01
0.756
0.754
EGR1
M10189_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_02
0.756
0.754
EGR1
M10190_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_09
0.756
0.754
EGR1
M10191_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_11
0.756
0.754
EGR1
M10192_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_12
0.756
0.754
EGR1
M10193_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_13
0.756
0.754
EGR1
M10194_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_15
0.756
0.754
EGR1
M10195_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_Q3
0.756
0.754
EGR1
M10196_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_Q6
0.756
0.754
EGR1
M04438_2.00
Homo sapiens
NHCDCCCMCNYNN
NNRNGKGGGHGDN
SELEX
Yin et al.(2017)
EGR1_eDBD_Methyl-HT-SELEX
0.756
0.754
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSAMXP00000005012
C2H2 ZF
342
366
FACPMGGCERRFSRSDELNRHVRIH
ENSAMXP00000005012
C2H2 ZF
372
394
FRCRVCARSFSRSDHLTTHTRTH
ENSAMXP00000005012
C2H2 ZF
400
422
FSCDSCGKRFARSDERKRHARVH
Links
Other
C2H2 ZF
family TFs
Other
Astyanax mexicanus
TFs
246 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy