CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSAMXG00000020476
(
Astyanax mexicanus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSAMXG00000020476
T087420_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zfp410
M00140_2.00
Mus musculus
CYATCCCA
TGGGATRG
PBM
Badis et al.(2009)
Zfp410_3034
0.765
0.826
ZNF410
M02882_2.00
Homo sapiens
KVNTATTATGGGATGKN
NMCATCCCATAATANBM
SELEX
Jolma et al.(2013)
ZNF410_1
0.765
0.826
ZNF410
M04435_2.00
Homo sapiens
NTATTATGGGNTRB
VYANCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_HT-SELEX
0.765
0.826
ZNF410
M04436_2.00
Homo sapiens
NTATTATGGGHTRB
VYADCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_Methyl-HT-SELEX
0.765
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSAMXP00000021087
C2H2 ZF
205
229
LRCPYENCHRTFTWPAHLKYHLKTH
ENSAMXP00000021087
C2H2 ZF
235
259
FRCGAEGCGKSFYVLQRLQVHMRTH
ENSAMXP00000021087
C2H2 ZF
265
289
FICNEKNCGKKFTTAGNLKNHKRTH
ENSAMXP00000021087
C2H2 ZF
295
319
FLCEADNCGRSFAEYSSLRKHMLVH
ENSAMXP00000021087
C2H2 ZF
325
348
HQCSICGKTFSQSGSRNVHMRKRH
Links
Other
C2H2 ZF
family TFs
Other
Astyanax mexicanus
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy