GFI1B (Bos taurus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSBTAG00000012772 T087868_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.814 0.957
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.814 0.957
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.814 0.957
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.812 0.949
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN

NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.812 0.949
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY

RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.812 0.949
GFI1B
M10243_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.812 0.949
GFI1B
M10244_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.812 0.949
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.812 0.949
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN

NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.812 0.949
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.782 0.833
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.772 0.877
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.772 0.877
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.772 0.877
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.772 0.877
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.772 0.877
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.772 0.877
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.772 0.877
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.772 0.877
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.770 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000016974 C2H2 ZF 164 187
ENSBTAP00000016974 C2H2 ZF 193 215
ENSBTAP00000016974 C2H2 ZF 221 243
ENSBTAP00000016974 C2H2 ZF 249 271
ENSBTAP00000016974 C2H2 ZF 277 299
ENSBTAP00000016974 C2H2 ZF 305 328

Links

Other C2H2 ZF family TFs
Other Bos taurus TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.827
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.824
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.816
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.816
GFI1B Canis familiaris ENSCAFG00000019877 I 0.816
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.814
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.814
GFI1B Sus scrofa ENSSSCG00000005737 I 0.814
Gfi1b Mus musculus ENSMUSG00000026815 D 0.814
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.814
GFI1B Felis catus ENSFCAG00000027147 I 0.814
GFI1B Equus caballus ENSECAG00000008127 I 0.814
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.812
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.812
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.812
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.812
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.812
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.812
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.812
GFI1B Homo sapiens ENSG00000165702 D 0.812
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.811
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.809
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.807
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.806
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.806
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.805
GFI1B Procavia capensis ENSPCAG00000012329 I 0.804
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.804
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.804
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.802
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.801
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.800
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.800
GFI1B Gallus gallus ENSGALG00000003478 I 0.800
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.800
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.800
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.800
Aan_R008865 Calypte anna Aan_R008865 I 0.800
Tal_R001363 Tyto alba Tal_R001363 I 0.799
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.797
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.794
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.790
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.788
gfi1b Danio rerio ENSDARG00000079947 I 0.787
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.786
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.786
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.785
GK24242 Drosophila willistoni FBgn0226203 I 0.782
GJ21268 Drosophila virilis FBgn0208401 I 0.782
GE14143 Drosophila yakuba FBgn0231766 I 0.782
LotgiG83709 Lottia gigantea LotgiG83709 I 0.782
MDOA011065 Musca domestica MDOA011065 I 0.782
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.782
GM16223 Drosophila sechellia FBgn0171139 I 0.782
GL26188 Drosophila persimilis FBgn0163770 I 0.782
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.782
sens-2 Drosophila melanogaster FBgn0051632 D 0.782
GG10437 Drosophila erecta FBgn0102746 I 0.782
GF15430 Drosophila ananassae FBgn0092455 I 0.782
GH13715 Drosophila grimshawi FBgn0121191 I 0.782
GI23984 Drosophila mojavensis FBgn0146708 I 0.782
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.780
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.777
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.777
gfi1b Oryzias latipes ENSORLG00000014390 I 0.777
NEMVEDRAFT_v1g182742 Nematostella vectensis NEMVEDRAFT_v1g182742 I 0.776
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.775
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.774
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.773
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.773
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.772
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.772
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.772
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.772
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.772
gfi1aa Danio rerio ENSDARG00000020746 I 0.772
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.772
gfi1ab Danio rerio ENSDARG00000044457 I 0.772
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.772
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.772
GFI1 Equus caballus ENSECAG00000006647 I 0.772
GFI1 Felis catus ENSFCAG00000005914 I 0.772
GFI1 Homo sapiens ENSG00000162676 D 0.772
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.772
GFI1 Canis familiaris ENSCAFG00000020155 I 0.772
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.772
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.772
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.772
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.772
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.772
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.772
GFI1 Bos taurus ENSBTAG00000016723 I 0.772
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.772
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.772
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.772
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.772
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.772
Gfi1 Mus musculus ENSMUSG00000029275 D 0.772
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.772
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.772
GFI1 Sus scrofa ENSSSCG00000006902 I 0.772
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.771
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.771
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.771
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.771
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.771
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.771
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.771
Tal_R006464 Tyto alba Tal_R006464 I 0.771
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.771
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.771
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.771
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.771
Aan_R000889 Calypte anna Aan_R000889 I 0.771
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.771
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.771
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.771
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.771
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.771
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.771
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.771
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.769
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.769
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.767
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.767
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.767
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.764
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.764
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.762
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.758
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.758
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.758
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.758
LotgiG129344 Lottia gigantea LotgiG129344 I 0.758
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.758