GLI3 (Canis familiaris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCAFG00000003535 T088254_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG

CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.827 0.991
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK

MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.827 0.991
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV

BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.827 0.991
GLI3
M10167_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.827 0.991
GLI3
M10168_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.827 0.991
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY

RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.827 0.991
Gli2
M01024_2.00
Mus musculus
NGACCACCYN

NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.807 0.939
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB

VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.807 0.939
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR

YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.807 0.939
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN

NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.807 0.939
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG

CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.807 0.939
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG

CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.807 0.939
GLI2
M10114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.807 0.939
GLI2
M10115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.807 0.939
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG

CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.807 0.939
Gli1
M01023_2.00
Mus musculus
NGACCACCHN

NDGGTGGTCN
PBM
Peterson et al.(2012)
Gli1
0.796 0.878
GLI1
M02643_2.00
Homo sapiens
GACCACCCAMG

CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI1
0.796 0.878
Gli1
M08976_2.00
Mus musculus
RGRCCACCCASV

BSTGGGTGGYCY
Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C
0.796 0.878
GLI1
M10176_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q2
0.796 0.878
GLI1
M10177_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3_01
0.796 0.878
GLI1
M10178_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3
0.796 0.878
GLI1
M10179_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI_Q6
0.796 0.878
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN

NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.781 0.991
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS

STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.781 0.991
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR

YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.781 0.991
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000005264 C2H2 ZF 479 504
ENSCAFP00000005264 C2H2 ZF 512 539
ENSCAFP00000005264 C2H2 ZF 545 569
ENSCAFP00000005264 C2H2 ZF 575 600
ENSCAFP00000005264 C2H2 ZF 606 631
ENSCAFP00000039478 C2H2 ZF 479 504
ENSCAFP00000039478 C2H2 ZF 512 539
ENSCAFP00000039478 C2H2 ZF 545 569
ENSCAFP00000039478 C2H2 ZF 575 600
ENSCAFP00000039478 C2H2 ZF 606 631

Links

Other C2H2 ZF family TFs
Other Canis familiaris TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30169.m006244 Ricinus communis 30169.m006244 N 0.000
AC234522.1_FG009 Zea mays AC234522.1_FG009 N 0.000
Aquca_013_00290 Aquilegia coerulea Aquca_013_00290 N 0.000
BGIOSGA031305 Oryza indica BGIOSGA031305 N 0.000
cassava18962.valid.m1 Manihot esculenta cassava18962.valid.m1 N 0.000
evm.TU.supercontig_107.76 Carica papaya evm.TU.supercontig_107.76 N 0.000
gene13234-v1.0-hybrid Fragaria vesca gene13234-v1.0-hybrid N 0.000
GLYMA10G37780 Glycine max GLYMA10G37780 N 0.000
Gorai.004G117900 Gossypium raimondii Gorai.004G117900 N 0.000
Gorai.008G275600 Gossypium raimondii Gorai.008G275600 N 0.000
GRMZM2G142502 Zea mays GRMZM2G142502 N 0.000
GSMUA_Achr1G03120_001 Musa acuminata GSMUA_Achr1G03120_001 N 0.000
MDP0000157870 Malus domestica MDP0000157870 N 0.000
MDP0000291317 Malus domestica MDP0000291317 N 0.000
MDP0000905888 Malus domestica MDP0000905888 N 0.000
mgf002951m Mimulus guttatus mgf002951m N 0.000
OBART09G20240 Oryza barthii OBART09G20240 N 0.000
OGLUM09G20980 Oryza glumaepatula OGLUM09G20980 N 0.000
OLONG_005584 Oryza longistaminata OLONG_005584 N 0.000
OMERI01G25790 Oryza meridionalis OMERI01G25790 N 0.000
ONIVA03G00390 Oryza nivara ONIVA03G00390 N 0.000
OPUNC09G18580 Oryza punctata OPUNC09G18580 N 0.000
ORGLA09G0165100 Oryza glaberrima ORGLA09G0165100 N 0.000
ORUFI09G21860 Oryza rufipogon ORUFI09G21860 N 0.000
OS09G0570200 Oryza sativa OS09G0570200 N 0.000
PK09701.1 Cannabis sativa PK09701.1 N 0.000
Pm019310 Prunus mume Pm019310 N 0.000
PRUPE_ppa002336mg Prunus persica PRUPE_ppa002336mg N 0.000
TCM_015200 Theobroma cacao TCM_015200 N 0.000
VIT_16s0050g00700 Vitis vinifera VIT_16s0050g00700 N 0.000