klf2 (Ciona intestinalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCING00000014590 T089107_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
luna
M03704_2.00
Drosophila melanogaster
RCCACRCCCH

DGGGYGTGGY
SELEX
Nitta et al.(2015)
luna_1
0.784 0.841
luna
M06163_2.00
Drosophila melanogaster
RRMHMCRCCC

GGGYGKDKYY
B1H
Zhu et al.(2011)
luna_SANGER_5_FBgn0040765
0.784 0.841
luna
M06164_2.00
Drosophila melanogaster
DRCCMCGCCCHNNN

NNNDGGGCGKGGYH
B1H
Zhu et al.(2011)
luna_SOLEXA_5_FBgn0040765
0.784 0.841
dar1
M06171_2.00
Drosophila melanogaster
RMCACACCCWH

DWGGGTGTGKY
B1H
Zhu et al.(2011)
CG12029_SANGER_10_FBgn0035454
0.777 0.797
dar1
M06172_2.00
Drosophila melanogaster
NNNRCCACRCCCHNN

NNDGGGYGTGGYNNN
B1H
Zhu et al.(2011)
CG12029_SOLEXA_5_FBgn0035454
0.777 0.797
CG42741
M06169_2.00
Drosophila melanogaster
RCCACRCCCWHY

RDWGGGYGTGGY
B1H
Zhu et al.(2011)
CG9895_SANGER_10_FBgn0034810
0.774 0.797
CG42741
M06170_2.00
Drosophila melanogaster
VRCCACRCCCH

DGGGYGTGGYB
B1H
Zhu et al.(2011)
CG9895_SOLEXA_5_FBgn0034810
0.774 0.797
Klf7
M00134_2.00
Mus musculus
NHHMCRCCCH

DGGGYGKDDN
PBM
Badis et al.(2009)
Klf7_0974
0.768 0.826
KLF6
M04400_2.00
Homo sapiens
NVMCACRCCCH

DGGGYGTGKBN
SELEX
Yin et al.(2017)
KLF6_eDBD_HT-SELEX
0.768 0.826
KLF7
M08298_2.00
Homo sapiens
VVCHMCGCCCH

DGGGCGKDGBB
ChIP-seq
Schmitges et al.(2016)
O75840.MEME
0.768 0.826
KLF6
M08857_2.00
Homo sapiens
BYBYVNBCYMCDCCCYBBN

NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_HUMAN.H11MO.0.A
0.768 0.826
Klf6
M08962_2.00
Mus musculus
BYBYVNBCYMCDCCCYBBN

NVVRGGGHGKRGVNBRVRV
Misc
Kulakovskiy et al.(2013)
KLF6_MOUSE.H11MO.0.B
0.768 0.826
KLF6
M10113_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CPBP_Q6
0.768 0.826
KLF6
M04401_2.00
Homo sapiens
NRCCACGCCCH

DGGGCGTGGYN
SELEX
Yin et al.(2017)
KLF6_eDBD_Methyl-HT-SELEX
0.768 0.826
klf-3
M00617_2.00
Caenorhabditis elegans
NHMCGCCCH

DGGGCGKDN
PBM
Narasimhan et al.(2015)
pTH9072
0.764 0.754
Klf12
M00787_2.00
Mus musculus
NNHMCRCCCH

DGGGYGKDNN
PBM
Weirauch et al.(2013)
pTH0977
0.761 0.754
Klf12
M02937_2.00
Mus musculus
GRCCACGCCCWHHHN

NDDDWGGGCGTGGYC
SELEX
Jolma et al.(2013)
Klf12_1
0.761 0.754
KLF12
M04430_2.00
Homo sapiens
DRCCACGCCCH

DGGGCGTGGYH
SELEX
Yin et al.(2017)
KLF12_FL_HT-SELEX
0.761 0.754
KLF12
M08299_2.00
Homo sapiens
SBNVGCCMCGCCCHB

VDGGGCGKGGCBNVS
ChIP-seq
Schmitges et al.(2016)
Q9Y4X4.MEME
0.761 0.754
KLF12
M08879_2.00
Homo sapiens
GCCCCGCCCYB

VRGGGCGGGGC
Misc
Kulakovskiy et al.(2013)
KLF12_HUMAN.H11MO.0.C
0.761 0.754
KLF12
M10186_2.00
Homo sapiens
HMYACDG

CHGTRKD
Transfac
Matys et al.(2006)
V$AP2REP_01
0.761 0.754
KLF12
M04431_2.00
Homo sapiens
RGSCGACGCCCN

NGGGCGTCGSCY
SELEX
Yin et al.(2017)
KLF12_FL_Methyl-HT-SELEX_1
0.761 0.754
KLF12
M04432_2.00
Homo sapiens
NRCCACGCCCH

DGGGCGTGGYN
SELEX
Yin et al.(2017)
KLF12_FL_Methyl-HT-SELEX_2
0.761 0.754
KLF5
M04410_2.00
Homo sapiens
NMCACRCCCH

DGGGYGTGKN
SELEX
Yin et al.(2017)
KLF5_eDBD_HT-SELEX
0.756 0.826
KLF5
M08086_2.00
Homo sapiens
BCCMCDCCCH

DGGGHGKGGV
ChIP-seq
Mathelier et al.(2014)
MA0599.1
0.756 0.826
KLF5
M08868_2.00
Homo sapiens
NHVNRCCMCDCCCH

DGGGHGKGGYNBDN
Misc
Kulakovskiy et al.(2013)
KLF5_HUMAN.H11MO.0.A
0.756 0.826
Klf5
M08965_2.00
Mus musculus
KCCMCDCCCHBBBCH

DGVVVDGGGHGKGGM
Misc
Kulakovskiy et al.(2013)
KLF5_MOUSE.H11MO.0.A
0.756 0.826
KLF5
M09502_2.00
Homo sapiens
GCCMCRCCCH

DGGGYGKGGC
Misc
Heinz et al.(2010)
LoVo-KLF5_GSE49402
0.756 0.826
KLF5
M10149_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BTEB2_Q3_01
0.756 0.826
KLF5
M10150_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BTEB2_Q3
0.756 0.826
KLF5
M04411_2.00
Homo sapiens
NMCACRCCYH

DRGGYGTGKN
SELEX
Yin et al.(2017)
KLF5_eDBD_Methyl-HT-SELEX
0.756 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000026309 C2H2 ZF 526 550
ENSCINP00000026309 C2H2 ZF 556 580
ENSCINP00000026309 C2H2 ZF 586 608

Links

Other C2H2 ZF family TFs
Other Ciona intestinalis TFs

494 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AB00152.1 Alternaria brassicicola AB00152.1 N 0.000
ARB_04480 Arthroderma benhamiae ARB_04480 N 0.000
CCM_09117 Cordyceps militaris CCM_09117 N 0.000
CH063_11689 Colletotrichum higginsianum CH063_11689 N 0.000
CHGG_05369 Chaetomium globosum CHGG_05369 N 0.000
Cob_05476 Colletotrichum orbiculare Cob_05476 N 0.000
COCC4DRAFT_156026 Bipolaris maydis COCC4DRAFT_156026 N 0.000
COCSADRAFT_213113 Bipolaris sorokiniana COCSADRAFT_213113 N 0.000
CTHT_0072490 Chaetomium thermophilum CTHT_0072490 N 0.000
estExt_Genewise1.C_170090 Neurospora discreta estExt_Genewise1.C_170090 N 0.000
GMDG_08515 Pseudogymnoascus destructans GMDG_08515 N 0.000
H101_07016 Trichophyton interdigitale H101_07016 N 0.000
HCBG_00501 Histoplasma capsulatum HCBG_00501 N 0.000
MCYG_05885 Arthroderma otae MCYG_05885 N 0.000
MCYG_05885 Microsporum canis MCYG_05885 N 0.000
MYCTH_2061546 Myceliophthora thermophila MYCTH_2061546 N 0.000
NCU05681 Neurospora crassa NCU05681 N 0.000
NEUTE1DRAFT_80790 Neurospora tetrasperma NEUTE1DRAFT_80790 N 0.000
PAAG_06800 Paracoccidioides sp lutzii PAAG_06800 N 0.000
PABG_01084 Paracoccidioides brasiliensis PABG_01084 N 0.000
PFICI_12751 Pestalotiopsis fici PFICI_12751 N 0.000
PMAA_055610 Penicillium marneffei PMAA_055610 N 0.000
PMAA_055610 Talaromyces marneffei PMAA_055610 N 0.000
PODANS_7_650 Podospora anserina PODANS_7_650 N 0.000
PTRG_10690 Pyrenophora triticirepentis PTRG_10690 N 0.000
PTT_05695 Pyrenophora teres PTT_05695 N 0.000
SAPIO_CDS2052 Scedosporium apiospermum SAPIO_CDS2052 N 0.000
SETTUDRAFT_153515 Setosphaeria turcica SETTUDRAFT_153515 N 0.000
SMAC_02038 Sordaria macrospora SMAC_02038 N 0.000
TEQG_06359 Trichophyton equinum TEQG_06359 N 0.000
TESG_07518 Trichophyton tonsurans TESG_07518 N 0.000
TRIREDRAFT_58853 Trichoderma reesei TRIREDRAFT_58853 N 0.000
TSTA_016750 Talaromyces stipitatus TSTA_016750 N 0.000
V499_03776 Pseudogymnoascus pannorum V499_03776 N 0.000