ENSCING00000018982 (Ciona intestinalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCING00000018982 T089120_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
YY1
M02877_2.00
Homo sapiens
NVSRCCATNDH

DHNATGGYSBN
SELEX
Jolma et al.(2013)
YY1_1
0.761 0.912
YY1
M04406_2.00
Homo sapiens
NDCCATYTTKRRBNDWNHGTGCK

MGCACDNWHNVYYMAARATGGHN
SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_1
0.761 0.912
YY1
M04407_2.00
Homo sapiens
NKMCGCCATYTTGN

NCAARATGGCGKMN
SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_2
0.761 0.912
YY1
M05845_2.00
Homo sapiens
NNNVGCCATNWYD

HRWNATGGCBNNN
SMiLE-seq
Isakova et al.(2017)
YY1
0.761 0.912
YY1
M08288_2.00
Homo sapiens
GCCGCCATBKYB

VRMVATGGCGGC
ChIP-seq
Schmitges et al.(2016)
P25490_1-4.RCADE
0.761 0.912
YY1
M08085_2.00
Homo sapiens
KCVGCCATBTTK

MAAVATGGCBGM
ChIP-seq
Mathelier et al.(2014)
MA0095.2
0.761 0.912
YY1
M07855_2.00
Homo sapiens
VNVGCCGCCATBTTK

MAAVATGGCGGCBNB
ChIP-seq
Gerstein et al.(2012)
GM12878_YY1_HudsonAlpha
0.761 0.912
YY1
M07856_2.00
Homo sapiens
GCSGCCATBTT

AAVATGGCSGC
ChIP-seq
Gerstein et al.(2012)
GM12891_YY1_HudsonAlpha
0.761 0.912
YY1
M07857_2.00
Homo sapiens
BSNVGCSGCCATBTT

AAVATGGCSGCBNSV
ChIP-seq
Gerstein et al.(2012)
GM12892_YY1_HudsonAlpha
0.761 0.912
YY1
M07858_2.00
Homo sapiens
NNVGCSGCCATBTTK

MAAVATGGCSGCBNN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_YY1_HudsonAlpha
0.761 0.912
YY1
M07859_2.00
Homo sapiens
SBSGCSGCCATBTTK

MAAVATGGCSGCSVS
ChIP-seq
Gerstein et al.(2012)
K562b_YY1_UCD
0.761 0.912
YY1
M07860_2.00
Homo sapiens
GCCGCCATBTTKNNN

NNNMAAVATGGCGGC
ChIP-seq
Gerstein et al.(2012)
K562_YY1_HudsonAlpha
0.761 0.912
YY1
M07861_2.00
Homo sapiens
VGCSGCCATBTTK

MAAVATGGCSGCB
ChIP-seq
Gerstein et al.(2012)
NT2-D1_YY1_UCD
0.761 0.912
YY1
M08237_2.00
Homo sapiens
VNVGCVGCCATBTTD

HAAVATGGCBGCBNB
ChIP-seq
Najafabadi et al.(2015b)
YY1
0.761 0.912
YY1
M08865_2.00
Homo sapiens
GCCGCCATYTTK

MAARATGGCGGC
Misc
Kulakovskiy et al.(2013)
TYY1_HUMAN.H11MO.0.A
0.761 0.912
Yy1
M08971_2.00
Mus musculus
GCCGCCATBTTB

VAAVATGGCGGC
Misc
Kulakovskiy et al.(2013)
TYY1_MOUSE.H11MO.0.A
0.761 0.912
YY1
M10138_2.00
Homo sapiens
NVNNDCCATNTWNNVWN

NWBNNWANATGGHNNBN
Transfac
Matys et al.(2006)
V$YY1_01
0.761 0.912
YY1
M10139_2.00
Homo sapiens
NNNSBGCCATCTDSNHTSND

HNSADNSHAGATGGCVSNNN
Transfac
Matys et al.(2006)
V$YY1_02
0.761 0.912
YY1
M10140_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_03
0.761 0.912
YY1
M10141_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_07
0.761 0.912
YY1
M10142_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_08
0.761 0.912
YY1
M10143_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q4_01
0.761 0.912
YY1
M10144_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6_02
0.761 0.912
YY1
M10145_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6_03
0.761 0.912
YY1
M10146_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6
0.761 0.912
YY1
M04408_2.00
Homo sapiens
NDCCATYTTKRRCDDWWHGTGCY

RGCACDWWHHGYYMAARATGGHN
SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_1
0.761 0.912
YY1
M04409_2.00
Homo sapiens
RKCSGCCATYTTGD

HCAARATGGCSGMY
SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_2
0.761 0.912
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000032514 C2H2 ZF 207 230
ENSCINP00000032514 C2H2 ZF 235 257
ENSCINP00000032514 C2H2 ZF 263 287
ENSCINP00000032514 C2H2 ZF 293 317

Links

Other C2H2 ZF family TFs
Other Ciona intestinalis TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSCSAVG00000003120 Ciona savignyi ENSCSAVG00000003120 I 0.827
Aqu1.223280 Amphimedon queenslandica Aqu1.223280 N 0.802
SMTD_0001228301 Schistosoma mattheei SMTD_0001228301 N 0.763
Sjc_0032810 Schistosoma japonicum Sjc_0032810 N 0.763
Smp_164190 Schistosoma mansoni Smp_164190 N 0.763
A_04912 Schistosoma haematobium A_04912 N 0.763
NEMVEDRAFT_v1g118750 Nematostella vectensis NEMVEDRAFT_v1g118750 I 0.761
L798_03352 Zootermopsis nevadensis L798_03352 I 0.761
KGM_02499 Danaus plexippus KGM_02499 I 0.761
NV10061 Nasonia vitripennis NV10061 I 0.761
RPRC009167 Rhodnius prolixus RPRC009167 I 0.761
SPU_010295 Strongylocentrotus purpuratus SPU_010295 I 0.761
YQE_09404 Dendroctonus ponderosae YQE_09404 I 0.761
SMAR005684 Strigamia maritima SMAR005684 I 0.761
SINV16765 Solenopsis invicta SINV16765 I 0.761
TC015577 Tribolium castaneum TC015577 I 0.761
GB49343 Apis mellifera GB49343 I 0.761
YY2 Tetraodon nigroviridis ENSTNIG00000010738 I 0.761
yy1a Tetraodon nigroviridis ENSTNIG00000017334 I 0.761
ENSTGUG00000012753 Taeniopygia guttata ENSTGUG00000012753 I 0.761
CpipJ_CPIJ014689 Culex pipiens CpipJ_CPIJ014689 I 0.761
ENSSHAG00000014750 Sarcophilus harrisii ENSSHAG00000014750 I 0.761
YY2 Takifugu rubripes ENSTRUG00000010532 I 0.761
yy1a Takifugu rubripes ENSTRUG00000012579 I 0.761
HelroG66045 Helobdella robusta HelroG66045 N 0.761
Aan_R011513 Calypte anna Aan_R011513 I 0.761
ENSXMAG00000013413 Xiphophorus maculatus ENSXMAG00000013413 I 0.761
ENSXMAG00000008440 Xiphophorus maculatus ENSXMAG00000008440 I 0.761
HMEL010415 Heliconius melpomene HMEL010415 I 0.761
Brh_R004031 Buceros rhinoceros Brh_R004031 I 0.761
yy1 Xenopus tropicalis XB-GENE-961263 I 0.761
yy1.S Xenopus laevis XB-GENE-961267 I 0.761
yy1.L Xenopus laevis XB-GENE-6254435 I 0.761
HHAL002529-PA Halyomorpha halys HHAL002529-PA I 0.761
CLEC004566 Cimex lectularius CLEC004566 I 0.761
AALB001578 Anopheles albimanus AALB001578 I 0.761
AFUN003297 Anopheles funestus AFUN003297 I 0.761
PPAI004379 Phlebotomus papatasi PPAI004379 I 0.761
LLOJ009958 Lutzomyia longipalpis LLOJ009958 I 0.761
ASIS015128 Anopheles sinensis ASIS015128 I 0.761
AMEC007067 Anopheles melas AMEC007067 I 0.761
Sakowv30026333m.g Saccoglossus kowalevskii Sakowv30026333m.g I 0.761
gw.8.511.1 Branchiostoma floridae gw.8.511.1 I 0.761
Cflo_15890--XP_392196.2_APIME Camponotus floridanus Cflo_15890--XP_392196.2_APIME I 0.761
Cflo_10375--XP_392196.2_APIME Camponotus floridanus Cflo_10375--XP_392196.2_APIME I 0.761
Yy1 Rattus norvegicus ENSRNOG00000004339 I 0.761
Alligator_sinensis_CCG004251.1 Alligator sinensis Alligator_sinensis_CCG004251.1 I 0.761
Gfo_R006742 Geospiza fortis Gfo_R006742 I 0.761
Myotis_brandtii_YY1_10025332 Myotis brandtii Myotis_brandtii_YY1_10025332 I 0.761
e_gw.8.110.1 Branchiostoma floridae e_gw.8.110.1 I 0.761
yakG036002 Bos grunniens yakG036002 I 0.761
Tal_R000269 Tyto alba Tal_R000269 I 0.761
Pvit_14266 Pogona vitticeps Pvit_14266 I 0.761
Afo_R004638 Aptenodytes forsteri Afo_R004638 I 0.761
YY1 Pan troglodytes ENSPTRG00000006717 I 0.761
ENSDNOG00000023949 Dasypus novemcinctus ENSDNOG00000023949 I 0.761
ENSECAG00000005805 Equus caballus ENSECAG00000005805 I 0.761
yy1a Danio rerio ENSDARG00000042796 I 0.761
yy1b Danio rerio ENSDARG00000027978 I 0.761
ENSCPOG00000020809 Cavia porcellus ENSCPOG00000020809 I 0.761
YY2 Echinops telfairi ENSETEG00000010999 I 0.761
ENSFALG00000002683 Ficedula albicollis ENSFALG00000002683 I 0.761
ENSGACG00000012595 Gasterosteus aculeatus ENSGACG00000012595 I 0.761
YY1 Gallus gallus ENSGALG00000017388 I 0.761
yy1a Gasterosteus aculeatus ENSGACG00000008573 I 0.761
YY1 Homo sapiens ENSG00000100811 D 0.761
YY1 Felis catus ENSFCAG00000024327 I 0.761
ENSCJAG00000016853 Callithrix jacchus ENSCJAG00000016853 I 0.761
YY1 Canis familiaris ENSCAFG00000017894 I 0.761
CPIJ014689 Culex quinquefasciatus CPIJ014689 I 0.761
DAPPUDRAFT_59123 Daphnia pulex DAPPUDRAFT_59123 I 0.761
BGIBMGA011179 Bombyx mori BGIBMGA011179 I 0.761
ADAC004141 Anopheles darlingi ADAC004141 I 0.761
ACEP14480 Atta cephalotes ACEP14480 I 0.761
ENSACAG00000013402 Anolis carolinensis ENSACAG00000013402 I 0.761
ENSAMEG00000011146 Ailuropoda melanoleuca ENSAMEG00000011146 I 0.761
YY1 Bos taurus ENSBTAG00000020819 I 0.761
ENSAPLG00000003589 Anas platyrhynchos ENSAPLG00000003589 I 0.761
ENSAMXG00000013302 Astyanax mexicanus ENSAMXG00000013302 I 0.761
ENSAMXG00000006146 Astyanax mexicanus ENSAMXG00000006146 I 0.761
ENSGMOG00000010949 Gadus morhua ENSGMOG00000010949 I 0.761
YY1 Gorilla gorilla ENSGGOG00000026332 I 0.761
ENSONIG00000020108 Oreochromis niloticus ENSONIG00000020108 I 0.761
YY2 Oryzias latipes ENSORLG00000009449 I 0.761
ENSONIG00000000896 Oreochromis niloticus ENSONIG00000000896 I 0.761
ENSOGAG00000006955 Otolemur garnettii ENSOGAG00000006955 I 0.761
ENSGMOG00000011803 Gadus morhua ENSGMOG00000011803 I 0.761
yy1a Oryzias latipes ENSORLG00000015640 I 0.761
ENSPANG00000009274 Papio anubis ENSPANG00000009274 I 0.761
ENSPPYG00000025949 Pongo abelii ENSPPYG00000025949 I 0.761
ENSPSIG00000016003 Pelodiscus sinensis ENSPSIG00000016003 I 0.761
ENSPMAG00000006025 Petromyzon marinus ENSPMAG00000006025 I 0.761
ENSPFOG00000007704 Poecilia formosa ENSPFOG00000007704 I 0.761
ENSPFOG00000002300 Poecilia formosa ENSPFOG00000002300 I 0.761
ENSOANG00000005723 Ornithorhynchus anatinus ENSOANG00000005723 I 0.761
ENSOCUG00000026938 Oryctolagus cuniculus ENSOCUG00000026938 I 0.761
YY1 Microcebus murinus ENSMICG00000006698 I 0.761
ENSMGAG00000013304 Meleagris gallopavo ENSMGAG00000013304 I 0.761
ENSLOCG00000011626 Lepisosteus oculatus ENSLOCG00000011626 I 0.761
ENSLAFG00000032414 Loxodonta africana ENSLAFG00000032414 I 0.761
ENSNLEG00000000999 Nomascus leucogenys ENSNLEG00000000999 I 0.761
ENSMLUG00000024984 Myotis lucifugus ENSMLUG00000024984 I 0.761
Yy1 Mus musculus ENSMUSG00000021264 D 0.761
ENSMODG00000013124 Monodelphis domestica ENSMODG00000013124 I 0.761
YY2 Macaca mulatta ENSMMUG00000029197 I 0.761
ENSMPUG00000002931 Mustela putorius furo ENSMPUG00000002931 I 0.761
ECANG7_04162 Echinococcus canadensis ECANG7_04162 N 0.760
TsM_001027300 Taenia solium TsM_001027300 N 0.760
EmuJ_000526400 Echinococcus multilocularis EmuJ_000526400 N 0.760
SSLN_0001111501 Schistocephalus solidus SSLN_0001111501 N 0.760
HmN_000055100 Hymenolepis microstoma HmN_000055100 N 0.760
MCOS_0000059401 Mesocestoides corti MCOS_0000059401 N 0.760
ENSSSCG00000030818 Sus scrofa ENSSSCG00000030818 I 0.758
ENSSSCG00000030865 Sus scrofa ENSSSCG00000030865 I 0.758
LCUP013338 Lucilia cuprina LCUP013338 I 0.758
PHUM284920 Pediculus humanus PHUM284920 I 0.758
ACYPI007734 Acyrthosiphon pisum ACYPI007734 I 0.758
YY2 Tupaia belangeri ENSTBEG00000011527 I 0.756