CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF550
(
Callithrix jacchus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSCJAG00000000044
T089168_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF550
M07772_2.00
Homo sapiens
TGCCYTAGCMBWSRYTYY
RRARYSWVKGCTARGGCA
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF550.RCADE.OriginalMapping
0.816
0.967
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000000079
C2H2 ZF
161
183
YKCKQCGKGFNRKWYLVRHQRVH
ENSCJAP00000000079
C2H2 ZF
189
211
YECNACGKAFSQSSTLIRHYLIH
ENSCJAP00000000079
C2H2 ZF
217
239
YKCPECGKAFRRRSYLMQHHPVH
ENSCJAP00000000079
C2H2 ZF
245
267
YECSQCRKAFTHRSTFIRHNRTH
ENSCJAP00000000079
C2H2 ZF
273
295
FECKECEKAFSNRAHLIQHYIIH
ENSCJAP00000000079
C2H2 ZF
301
323
YDCMECGKAFRCSSELMQHQRIH
ENSCJAP00000000079
C2H2 ZF
329
351
YECTQCGKAFHRSTYLIQHSVIH
ENSCJAP00000000079
C2H2 ZF
357
379
YKCIQCGKAFKRRSHLLQHQRVH
Links
Other
C2H2 ZF
family TFs
Other
Callithrix jacchus
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy