CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PRDM5
(
Callithrix jacchus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSCJAG00000003133
T089270_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Prdm5
M08986_2.00
Mus musculus
DCCHBSHBCTCCHKB
VMDGGAGVDSVDGGH
Misc
Kulakovskiy et al.(2013)
PRDM5_MOUSE.H11MO.0.A
0.766
0.942
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000005724
C2H2 ZF
111
134
YACPQCESSFTSEDILAEHLQTLH
ENSCJAP00000005724
C2H2 ZF
143
164
FKCKSCGKKFPVKQALQRHVLQ
ENSCJAP00000005724
C2H2 ZF
178
199
FQCSVCNSSFSSASSFEQHQET
ENSCJAP00000005724
C2H2 ZF
206
231
FVCKADSCGKRLKSKDALKRHQENVH
ENSCJAP00000005724
C2H2 ZF
239
261
LICSVCNKKCSSASSLQEHRKIH
ENSCJAP00000005724
C2H2 ZF
264
286
FDCQECMKKFISANQLKRHMITH
ENSCJAP00000005724
C2H2 ZF
292
314
YKCEICNKSFKRLDQVGAHKVIH
ENSCJAP00000005724
C2H2 ZF
320
342
YKCKLCGKGFAHRNVYKNHKKTH
ENSCJAP00000005724
C2H2 ZF
348
370
FQCEECKALFRTPFSLQRHLLIH
ENSCJAP00000005724
C2H2 ZF
376
399
FKCHHCDATFKRKDTLNVHVQVVH
ENSCJAP00000005724
C2H2 ZF
405
427
YRCELCNKAFVTPSVLRSHKKTH
ENSCJAP00000005724
C2H2 ZF
434
455
ICPYCGQKFASSGTLRVHIRSH
ENSCJAP00000005724
C2H2 ZF
461
483
YQCPYCEKGFSKNDGLKMHIRTH
ENSCJAP00000005724
C2H2 ZF
489
511
YKCSECSKAFSQKRGLDEHKRTH
ENSCJAP00000005724
C2H2 ZF
517
539
FQCDVCDLAFSLKKMLIRHKMTH
ENSCJAP00000005724
C2H2 ZF
547
569
ECQFCHKKFTRNDYLKVHMDNIH
ENSCJAP00000005731
C2H2 ZF
167
190
YACPQCESSFTSEDILAEHLQTLH
ENSCJAP00000005731
C2H2 ZF
199
221
FKCKSCGKKFPVKQALQRHFEQH
ENSCJAP00000005731
C2H2 ZF
231
256
FVCKADSCGKRLKSKDALKRHQENVH
ENSCJAP00000005731
C2H2 ZF
264
286
LICSVCNKKCSSASSLQEHRKIH
ENSCJAP00000005731
C2H2 ZF
289
311
FDCQECMKKFISANQLKRHMITH
ENSCJAP00000005731
C2H2 ZF
317
339
YKCEICNKSFKRLDQVGAHKVIH
ENSCJAP00000005731
C2H2 ZF
345
367
YKCKLCGKGFAHRNVYKNHKKTH
ENSCJAP00000005731
C2H2 ZF
373
395
FQCEECKALFRTPFSLQRHLLIH
ENSCJAP00000005731
C2H2 ZF
401
424
FKCHHCDATFKRKDTLNVHVQVVH
ENSCJAP00000005731
C2H2 ZF
430
452
YRCELCNKAFVTPSVLRSHKKTH
ENSCJAP00000005731
C2H2 ZF
459
480
ICPYCGQKFASSGTLRVHIRSH
ENSCJAP00000005735
C2H2 ZF
167
190
YACPQCESSFTSEDILAEHLQTLH
ENSCJAP00000005735
C2H2 ZF
199
221
FKCKSCGKKFPVKQALQRHFEQH
ENSCJAP00000005735
C2H2 ZF
231
256
FVCKADSCGKRLKSKDALKRHQENVH
ENSCJAP00000005735
C2H2 ZF
264
286
LICSVCNKKCSSASSLQEHRKIH
ENSCJAP00000005735
C2H2 ZF
289
311
FDCQECMKKFISANQLKRHMITH
ENSCJAP00000005735
C2H2 ZF
317
339
YKCEICNKSFKRLDQVGAHKVIH
ENSCJAP00000005735
C2H2 ZF
345
367
YKCKLCGKGFAHRNVYKNHKKTH
ENSCJAP00000005735
C2H2 ZF
373
395
FQCEECKALFRTPFSLQRHLLIH
ENSCJAP00000005735
C2H2 ZF
401
424
FKCHHCDATFKRKDTLNVHVQVVH
ENSCJAP00000005735
C2H2 ZF
430
452
YRCELCNKAFVTPSVLRSHKKTH
ENSCJAP00000005735
C2H2 ZF
459
480
ICPYCGQKFASSGTLRVHIRSH
ENSCJAP00000005735
C2H2 ZF
486
508
YQCPYCEKGFSKNDGLKMHIRTH
ENSCJAP00000005735
C2H2 ZF
514
536
YKCSECSKAFSQKRGLDEHKRTH
ENSCJAP00000005735
C2H2 ZF
542
564
FQCDVCDLAFSLKKMLIRHKMTH
ENSCJAP00000005735
C2H2 ZF
572
594
ECQFCHKKFTRNDYLKVHMDNIH
ENSCJAP00000005738
C2H2 ZF
167
190
YACPQCESSFTSEDILAEHLQTLH
ENSCJAP00000005738
C2H2 ZF
199
220
FKCKSCGKKFPVKQALQRHVLQ
ENSCJAP00000005738
C2H2 ZF
234
255
FQCSVCNSSFSSASSFEQHQET
ENSCJAP00000005738
C2H2 ZF
262
287
FVCKADSCGKRLKSKDALKRHQENVH
ENSCJAP00000005738
C2H2 ZF
295
317
LICSVCNKKCSSASSLQEHRKIH
ENSCJAP00000005738
C2H2 ZF
320
342
FDCQECMKKFISANQLKRHMITH
ENSCJAP00000005738
C2H2 ZF
348
370
YKCEICNKSFKRLDQVGAHKVIH
ENSCJAP00000005738
C2H2 ZF
376
398
YKCKLCGKGFAHRNVYKNHKKTH
ENSCJAP00000005738
C2H2 ZF
404
426
FQCEECKALFRTPFSLQRHLLIH
ENSCJAP00000005738
C2H2 ZF
432
455
FKCHHCDATFKRKDTLNVHVQVVH
ENSCJAP00000005738
C2H2 ZF
461
483
YRCELCNKAFVTPSVLRSHKKTH
ENSCJAP00000005738
C2H2 ZF
490
511
ICPYCGQKFASSGTLRVHIRSH
ENSCJAP00000005738
C2H2 ZF
517
539
YQCPYCEKGFSKNDGLKMHIRTH
ENSCJAP00000005738
C2H2 ZF
545
567
YKCSECSKAFSQKRGLDEHKRTH
ENSCJAP00000005738
C2H2 ZF
573
595
FQCDVCDLAFSLKKMLIRHKMTH
ENSCJAP00000005738
C2H2 ZF
603
625
ECQFCHKKFTRNDYLKVHMDNIH
Links
Other
C2H2 ZF
family TFs
Other
Callithrix jacchus
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy