GLI1 (Callithrix jacchus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCJAG00000007324 T089352_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gli1
M01023_2.00
Mus musculus
NGACCACCHN

NDGGTGGTCN
PBM
Peterson et al.(2012)
Gli1
0.827 1.000
GLI1
M02643_2.00
Homo sapiens
GACCACCCAMG

CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI1
0.827 1.000
Gli1
M08976_2.00
Mus musculus
RGRCCACCCASV

BSTGGGTGGYCY
Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C
0.827 1.000
GLI1
M10176_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q2
0.827 1.000
GLI1
M10177_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3_01
0.827 1.000
GLI1
M10178_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3
0.827 1.000
GLI1
M10179_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI_Q6
0.827 1.000
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG

CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.796 0.886
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK

MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.796 0.886
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV

BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.796 0.886
GLI3
M10167_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.796 0.886
GLI3
M10168_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.796 0.886
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY

RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.796 0.886
Gli2
M01024_2.00
Mus musculus
NGACCACCYN

NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.779 0.851
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB

VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.779 0.851
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR

YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.779 0.851
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN

NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.779 0.851
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG

CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.779 0.851
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG

CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.779 0.851
GLI2
M10114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.779 0.851
GLI2
M10115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.779 0.851
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG

CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.779 0.851
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000013656 C2H2 ZF 108 132
ENSCJAP00000013656 C2H2 ZF 140 167
ENSCJAP00000013656 C2H2 ZF 173 197
ENSCJAP00000013656 C2H2 ZF 203 228
ENSCJAP00000013656 C2H2 ZF 234 259
ENSCJAP00000013686 C2H2 ZF 236 260
ENSCJAP00000013686 C2H2 ZF 268 295
ENSCJAP00000013686 C2H2 ZF 301 325
ENSCJAP00000013686 C2H2 ZF 331 356
ENSCJAP00000013686 C2H2 ZF 362 387
ENSCJAP00000024516 C2H2 ZF 108 132
ENSCJAP00000024516 C2H2 ZF 140 167
ENSCJAP00000024516 C2H2 ZF 173 197
ENSCJAP00000024516 C2H2 ZF 203 228
ENSCJAP00000024516 C2H2 ZF 234 259
ENSCJAP00000046605 C2H2 ZF 195 219
ENSCJAP00000046605 C2H2 ZF 227 254
ENSCJAP00000046605 C2H2 ZF 260 284
ENSCJAP00000046605 C2H2 ZF 290 315
ENSCJAP00000046605 C2H2 ZF 321 346

Links

Other C2H2 ZF family TFs
Other Callithrix jacchus TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA04G05390 Glycine max GLYMA04G05390 I 0.000
GLYMA06G05450 Glycine max GLYMA06G05450 I 0.000
GLYMA10G23084 Glycine max GLYMA10G23084 N 0.000
GLYMA17G34791 Glycine max GLYMA17G34791 I 0.000
GLYMA18G17143 Glycine max GLYMA18G17143 I 0.000
LjSGA_061558.1 Lotus japonicus LjSGA_061558.1 I 0.000
MTR_3g104370 Medicago truncatula MTR_3g104370 I 0.000
SapurV1A.1274s0030 Salix purpurea SapurV1A.1274s0030 I 0.000
Solyc05g013420.1 Solanum lycopersicum Solyc05g013420.1 I 0.000
Solyc11g050730.1 Solanum lycopersicum Solyc11g050730.1 N 0.000
Solyc11g013560.1 Solanum lycopersicum Solyc11g013560.1 N 0.000
Solyc10g019150.1 Solanum lycopersicum Solyc10g019150.1 N 0.000
PGSC0003DMG400018620 Solanum tuberosum PGSC0003DMG400018620 N 0.000
PGSC0003DMG400036212 Solanum tuberosum PGSC0003DMG400036212 I 0.000
PGSC0003DMG400034640 Solanum tuberosum PGSC0003DMG400034640 N 0.000
PGSC0003DMG400027794 Solanum tuberosum PGSC0003DMG400027794 N 0.000
PGSC0003DMG400034516 Solanum tuberosum PGSC0003DMG400034516 N 0.000