CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZFP1
(
Cavia porcellus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSCPOG00000000634
T089767_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZFP1
M04601_2.00
Homo sapiens
NTWYYATACCYWGCH
DGCWRGGTATRRWAN
SELEX
Yin et al.(2017)
ZFP1_eDBD_HT-SELEX
0.822
0.973
ZFP1
M05854_2.00
Homo sapiens
CCWRCHMAACTAWCC
GGWTAGTTKDGYWGG
SMiLE-seq
Isakova et al.(2017)
ZFP1_1
0.822
0.973
ZFP1
M05855_2.00
Homo sapiens
NTDYBATACCCANHH
DDNTGGGTATVRHAN
SMiLE-seq
Isakova et al.(2017)
ZFP1_2
0.822
0.973
ZFP1
M07670_2.00
Homo sapiens
YNMNTWTTATACCCARCCCWNMTRKCCM
KGGMYAKNWGGGYTGGGTATAAWANKNR
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZFP1.MEME.OriginalMapping
0.822
0.973
ZFP1
M04602_2.00
Homo sapiens
NTWYYATACCYWRCH
DGYWRGGTATRRWAN
SELEX
Yin et al.(2017)
ZFP1_eDBD_Methyl-HT-SELEX
0.822
0.973
Zfp1
M10357_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZFP1_02
0.805
0.940
Zfp1
M10358_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZFP1_03
0.805
0.940
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000000559
C2H2 ZF
136
158
FICNYCDKAFPFKSLLISHKRIH
ENSCPOP00000000559
C2H2 ZF
164
186
YECNVCKKTFSHKANLIKHQRIH
ENSCPOP00000000559
C2H2 ZF
192
214
FECPECGKAFTHQSNLIVHQRAH
ENSCPOP00000000559
C2H2 ZF
220
242
YECSDCGKTFAQKFELTTHQRIH
ENSCPOP00000000559
C2H2 ZF
248
270
YECNVCAKTFFKKSNLIIHQKIH
ENSCPOP00000000559
C2H2 ZF
276
298
YECSECGKSFIQNSQLIIHMRTH
ENSCPOP00000000559
C2H2 ZF
304
326
YECTECGKTFSQRSTLRLHLRIH
ENSCPOP00000000559
C2H2 ZF
332
354
YECTECGKAFSRKSRLSVHQRVH
Links
Other
C2H2 ZF
family TFs
Other
Cavia porcellus
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy