CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SCRT2
(
Cavia porcellus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSCPOG00000008447
T089876_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCRT2
M02925_2.00
Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY
SELEX
Jolma et al.(2013)
SCRT2_1
0.827
0.982
SCRT2
M04643_2.00
Homo sapiens
NGCAACAGGTD
HACCTGTTGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX
0.827
0.982
SCRT2
M04644_2.00
Homo sapiens
NGCRACAGGTG
CACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX
0.827
0.982
SCRT1
M02929_2.00
Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY
SELEX
Jolma et al.(2013)
SCRT1_1
0.786
0.891
SCRT1
M04655_2.00
Homo sapiens
NKCAACAGGTD
HACCTGTTGMN
SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX
0.786
0.891
SCRT1
M08397_2.00
Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY
ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE
0.786
0.891
SCRT1
M04656_2.00
Homo sapiens
NGCRACAGGTD
HACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX
0.786
0.891
scrt
M03673_2.00
Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY
SELEX
Nitta et al.(2015)
scrt_1
0.774
0.855
scrt
M06085_2.00
Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK
B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880
0.774
0.855
scrt
M06086_2.00
Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880
0.774
0.855
scrt
M06087_2.00
Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880
0.774
0.855
CG12605
M03691_2.00
Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY
SELEX
Nitta et al.(2015)
CG12605_1
0.758
0.818
CG12605
M06139_2.00
Drosophila melanogaster
CACCTGTKG
CMACAGGTG
B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481
0.758
0.818
CG12605
M06140_2.00
Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK
B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481
0.758
0.818
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000016638
C2H2 ZF
73
95
HACAECGKTYATSSNLSRHKQTH
ENSCPOP00000016638
C2H2 ZF
105
126
KCPTCGKAYVSMPALAMHVLTH
ENSCPOP00000016638
C2H2 ZF
130
152
HKCGVCGKAFSRPWLLQGHMRSH
ENSCPOP00000016638
C2H2 ZF
158
180
FGCAHCGKAFADRSNLRAHMQTH
ENSCPOP00000016638
C2H2 ZF
186
204
YRCRQCDKTFALKSYLHKH
ENSCPOP00000018203
C2H2 ZF
148
170
HACAECGKTYATSSNLSRHKQTH
ENSCPOP00000018203
C2H2 ZF
180
201
KCPTCGKAYVSMPALAMHVLTH
ENSCPOP00000018203
C2H2 ZF
205
227
HKCGVCGKAFSRPWLLQGHMRSH
ENSCPOP00000018203
C2H2 ZF
233
255
FGCAHCGKAFADRSNLRAHMQTH
ENSCPOP00000018203
C2H2 ZF
261
279
YRCRQCDKTFALKSYLHKH
Links
Other
C2H2 ZF
family TFs
Other
Cavia porcellus
TFs
183 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy