CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF558
(
Cavia porcellus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSCPOG00000009453
T089897_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF558
M07620_2.00
Homo sapiens
HKGRAYHTGTRGRTKBATRYCTTYCAK
MTGRAAGRYATVMAYCYACADRTYCMD
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF558.RCADE.ReprocessedData
0.824
0.966
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000008486
C2H2 ZF
73
94
ECNQCFKVFSTKSNLTQHKRIH
ENSCPOP00000008486
C2H2 ZF
100
122
YDCNQCGKSFSSRSYLTIHRRIH
ENSCPOP00000008486
C2H2 ZF
128
150
YECSHCGKAFSDPSSLRLHVRIH
ENSCPOP00000008486
C2H2 ZF
156
178
YECNQCFHVFRTSCNLKSHKRIH
ENSCPOP00000008486
C2H2 ZF
184
206
HECNQCGKAFSTRSSLTGHNSIH
ENSCPOP00000008486
C2H2 ZF
212
234
YECHDCGKAFRKSSYLTQHVRTH
ENSCPOP00000008486
C2H2 ZF
240
262
YECSECGKSFSSSFSLTVHRRIH
ENSCPOP00000008486
C2H2 ZF
268
290
YECSDCGKAFNNLSAVKKHLRTH
ENSCPOP00000008486
C2H2 ZF
296
318
YECNHCGKSFTSNSYLSVHKRIH
Links
Other
C2H2 ZF
family TFs
Other
Cavia porcellus
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy