ZNF580 (Cavia porcellus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCPOG00000019582 T090003_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF580
M04637_2.00
Homo sapiens
VCTACCCYHNVCTACCCY

RGGGTAGBNDRGGGTAGB
SELEX
Yin et al.(2017)
ZNF580_eDBD_HT-SELEX
0.827 1.000
ZNF580
M04639_2.00
Homo sapiens
VCTACCNYHNNVCTACCNH

DNGGTAGBNNDRNGGTAGB
SELEX
Yin et al.(2017)
ZNF580_FL_HT-SELEX_1
0.827 1.000
ZNF580
M04640_2.00
Homo sapiens
BRTTATGTTAAATWRTTACCNYN

NRNGGTAAYWATTTAACATAAYV
SELEX
Yin et al.(2017)
ZNF580_FL_HT-SELEX_2
0.827 1.000
ZNF580
M04638_2.00
Homo sapiens
MCTACCCTHRMCTACCCT

AGGGTAGKYDAGGGTAGK
SELEX
Yin et al.(2017)
ZNF580_eDBD_Methyl-HT-SELEX
0.827 1.000
ZNF580
M04641_2.00
Homo sapiens
MCTACCHYNNNMCTACCHH

DDGGTAGKNNNRDGGTAGK
SELEX
Yin et al.(2017)
ZNF580_FL_Methyl-HT-SELEX_1
0.827 1.000
ZNF580
M04642_2.00
Homo sapiens
NRTTATGTTAAATWRTTACCHTN

NADGGTAAYWATTTAACATAAYN
SELEX
Yin et al.(2017)
ZNF580_FL_Methyl-HT-SELEX_2
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000015195 C2H2 ZF 92 114
ENSCPOP00000015195 C2H2 ZF 120 142
ENSCPOP00000015195 C2H2 ZF 150 172

Links

Other C2H2 ZF family TFs
Other Cavia porcellus TFs

Invalid Input OrderBy

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action