CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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znf76
(
Danio rerio
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSDARG00000013279
T090831_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Is expressed in eye; gut; hindbrain; midbrain hindbrain boundary; and trigeminal placode. Orthologous to human ZNF76 (zinc finger protein 76). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.793
0.888
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.793
0.888
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.793
0.888
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.793
0.888
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.775
0.857
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.775
0.857
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.775
0.857
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.775
0.857
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.775
0.857
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.775
0.857
ZNF143
M10249_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.775
0.857
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.773
0.851
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000020208
C2H2 ZF
168
192
FRCEHPGCGRYYTTAHHLKVHERSH
ENSDARP00000020208
C2H2 ZF
198
222
YRCEVHSCGKAFATGYGLKSHQRTH
ENSDARP00000020208
C2H2 ZF
228
252
YKCPEDMCYKAFKTSGDLQKHVRTH
ENSDARP00000020208
C2H2 ZF
258
282
FKCPFEGCGRSFTTSNIRKVHTRTH
ENSDARP00000020208
C2H2 ZF
288
312
YLCPEPSCGRAFASATNYKNHMRIH
ENSDARP00000020208
C2H2 ZF
318
342
YLCTVPGCGKSFTEYSSLYKHHVVH
ENSDARP00000020208
C2H2 ZF
348
371
YTCSHCGKTYRQTSTLAMHKRTAH
Links
Other
C2H2 ZF
family TFs
Other
Danio rerio
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy