scrt2 (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000056175 T090955_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
scrt
M03673_2.00
Drosophila melanogaster
RHGCAACAGGTGK

MCACCTGTTGCDY
SELEX
Nitta et al.(2015)
scrt_1
0.792 0.841
scrt
M06085_2.00
Drosophila melanogaster
MCCACCTGTTG

CAACAGGTGGK
B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880
0.792 0.841
scrt
M06086_2.00
Drosophila melanogaster
DNKCAACAGGTGK

MCACCTGTTGMNH
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880
0.792 0.841
scrt
M06087_2.00
Drosophila melanogaster
VMCACCTGTTGMN

NKCAACAGGTGKB
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880
0.792 0.841
CG12605
M03691_2.00
Drosophila melanogaster
RHGCAACAGGTGN

NCACCTGTTGCDY
SELEX
Nitta et al.(2015)
CG12605_1
0.786 0.823
CG12605
M06139_2.00
Drosophila melanogaster
CACCTGTKG

CMACAGGTG
B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481
0.786 0.823
CG12605
M06140_2.00
Drosophila melanogaster
MCACCTGTKGVNN

NNBCMACAGGTGK
B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481
0.786 0.823
SCRT1
M02929_2.00
Homo sapiens
RHKCAACAGGTGKNH

DNMCACCTGTTGMDY
SELEX
Jolma et al.(2013)
SCRT1_1
0.785 0.885
SCRT1
M04655_2.00
Homo sapiens
NKCAACAGGTD

HACCTGTTGMN
SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX
0.785 0.885
SCRT1
M08397_2.00
Homo sapiens
RWKCAACAGGTG

CACCTGTTGMWY
ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE
0.785 0.885
SCRT1
M04656_2.00
Homo sapiens
NGCRACAGGTD

HACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX
0.785 0.885
SCRT2
M02925_2.00
Homo sapiens
RHGCAACAGGTGB

VCACCTGTTGCDY
SELEX
Jolma et al.(2013)
SCRT2_1
0.774 0.850
SCRT2
M04643_2.00
Homo sapiens
NGCAACAGGTD

HACCTGTTGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX
0.774 0.850
SCRT2
M04644_2.00
Homo sapiens
NGCRACAGGTG

CACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX
0.774 0.850
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000053781 C2H2 ZF 162 184
ENSDARP00000053781 C2H2 ZF 194 215
ENSDARP00000053781 C2H2 ZF 219 241
ENSDARP00000053781 C2H2 ZF 247 269
ENSDARP00000053781 C2H2 ZF 275 296

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scrt2 Tetraodon nigroviridis ENSTNIG00000012473 I 0.816
scrt2 Takifugu rubripes ENSTRUG00000007620 I 0.816
ENSPFOG00000007738 Poecilia formosa ENSPFOG00000007738 I 0.816
scrt2 Oryzias latipes ENSORLG00000015072 I 0.816
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.816
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.816
ENSAMXG00000018733 Astyanax mexicanus ENSAMXG00000018733 I 0.816
ISCW021315 Ixodes scapularis ISCW021315 I 0.811
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.806
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.806
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.806
scrt1b Oryzias latipes ENSORLG00000008641 I 0.806
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.806
ENSGMOG00000019519 Gadus morhua ENSGMOG00000019519 I 0.806
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.806
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.806
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I 0.806
scrt1b Takifugu rubripes ENSTRUG00000011637 I 0.806
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.804
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.804
scrt1a Danio rerio ENSDARG00000100821 I 0.804
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.804
scrt1b Gasterosteus aculeatus ENSGACG00000008982 I 0.804
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.804
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.804
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.804
SMAR010760 Strigamia maritima SMAR010760 I 0.804
scrt1b Danio rerio ENSDARG00000040214 I 0.804
ENSAMXG00000018604 Astyanax mexicanus ENSAMXG00000018604 I 0.804
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.804
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.804
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.802
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.800
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.799
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.793
GK17507 Drosophila willistoni FBgn0219506 I 0.792
GE21392 Drosophila yakuba FBgn0238652 I 0.792
GD13794 Drosophila simulans FBgn0185494 I 0.792
GJ16103 Drosophila virilis FBgn0203288 I 0.792
GH15771 Drosophila grimshawi FBgn0123242 I 0.792
scrt Drosophila melanogaster FBgn0004880 D 0.792
GI12551 Drosophila mojavensis FBgn0135308 I 0.792
GM14603 Drosophila sechellia FBgn0169524 I 0.792
GM11368 Drosophila sechellia FBgn0166311 I 0.792
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.792
GF25020 Drosophila ananassae FBgn0102012 I 0.792
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.792
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.792
LCUP005780 Lucilia cuprina LCUP005780 I 0.792
MDOA005810 Musca domestica MDOA005810 I 0.792
GG15174 Drosophila erecta FBgn0107427 I 0.792
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.792
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.792
AAEL005176 Aedes aegypti AAEL005176 I 0.790
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.790
AATE020159 Anopheles atroparvus AATE020159 I 0.790
CLEC001353 Cimex lectularius CLEC001353 I 0.790
PHUM474180 Pediculus humanus PHUM474180 I 0.790
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.790
L798_11766 Zootermopsis nevadensis L798_11766 I 0.790
ACHR010032 Anopheles christyi ACHR010032 I 0.790
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.790
ACOM031685 Anopheles coluzzii ACOM031685 I 0.790
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.790
ASIS022059 Anopheles sinensis ASIS022059 I 0.790
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.790
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.790
AMEM013788 Anopheles merus AMEM013788 I 0.790
AMEC013076 Anopheles melas AMEC013076 I 0.790
ACUA022497 Anopheles culicifacies ACUA022497 I 0.790
AFAF007486 Anopheles farauti AFAF007486 I 0.790
AFUN002786 Anopheles funestus AFUN002786 I 0.790
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.790
AGAP006791 Anopheles gambiae AGAP006791 I 0.790
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.790
SCRT2 Gallus gallus ENSGALG00000028912 I 0.790
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.788
GG14232 Drosophila erecta FBgn0106493 I 0.786
GE20660 Drosophila yakuba FBgn0237965 I 0.786
GK16692 Drosophila willistoni FBgn0218694 I 0.786
GD13305 Drosophila simulans FBgn0185024 I 0.786
GM14024 Drosophila sechellia FBgn0168953 I 0.786
estExt_fgenesh2_pm.C_2290002 Branchiostoma floridae estExt_fgenesh2_pm.C_2290002 I 0.786
GF24781 Drosophila ananassae FBgn0101774 I 0.786
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.786
CG12605 Drosophila melanogaster FBgn0035481 D 0.786
GD13304 Drosophila simulans FBgn0185023 I 0.786
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.786
ENSPANG00000017232 Papio anubis ENSPANG00000017232 I 0.785
SCRT1 Loxodonta africana ENSLAFG00000031587 I 0.785
Scrt1 Mus musculus ENSMUSG00000048385 I 0.785
ENSOARG00000014008 Ovis aries ENSOARG00000014008 I 0.785
SCRT1 Otolemur garnettii ENSOGAG00000026538 I 0.785
Scrt1 Rattus norvegicus ENSRNOG00000025594 I 0.785
SCRT1 Homo sapiens ENSG00000261678 D 0.785
SCRT1 Gorilla gorilla ENSGGOG00000013612 I 0.785
SCRT1 Bos taurus ENSBTAG00000046208 I 0.785
ENSAMEG00000005557 Ailuropoda melanoleuca ENSAMEG00000005557 I 0.785
ENSCSAG00000008549 Chlorocebus sabaeus ENSCSAG00000008549 I 0.785
SCRT1 Sus scrofa ENSSSCG00000025879 I 0.785
ENSSTOG00000023184 Ictidomys tridecemlineatus ENSSTOG00000023184 I 0.785
SCRT1 Dasypus novemcinctus ENSDNOG00000043826 I 0.785
ENSCPOG00000024058 Cavia porcellus ENSCPOG00000024058 I 0.785
SCRT1 Callithrix jacchus ENSCJAG00000021406 I 0.785
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.784
SCRT1 Macaca mulatta ENSMMUG00000028886 I 0.784
LCUP005777 Lucilia cuprina LCUP005777 I 0.784
MDOA001622 Musca domestica MDOA001622 I 0.784
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.782
CapteG223614 Capitella teleta CapteG223614 I 0.782
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.782
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.781
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.781
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.780
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.780
TriadG20314 Trichoplax adhaerens TriadG20314 I 0.780
AATE010651 Anopheles atroparvus AATE010651 I 0.779
AAEL009230 Aedes aegypti AAEL009230 I 0.779
AFAF017001 Anopheles farauti AFAF017001 I 0.779
AMEM017035 Anopheles merus AMEM017035 I 0.779
ASIS012063 Anopheles sinensis ASIS012063 I 0.779
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.779
AMEC015586 Anopheles melas AMEC015586 I 0.779
AFUN001835 Anopheles funestus AFUN001835 I 0.779
ACUA003488 Anopheles culicifacies ACUA003488 I 0.779
ACUA020861 Anopheles culicifacies ACUA020861 I 0.779
AAEL014359 Aedes aegypti AAEL014359 I 0.779
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.779
ACOM031677 Anopheles coluzzii ACOM031677 I 0.779
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.779
AGAP006794 Anopheles gambiae AGAP006794 I 0.779
KGM_21493 Danaus plexippus KGM_21493 I 0.778
HMEL014701 Heliconius melpomene HMEL014701 I 0.778
MCINX009925 Melitaea cinxia MCINX009925 I 0.778
ACYPI004643 Acyrthosiphon pisum ACYPI004643 I 0.778
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.778
SCRT2 Tursiops truncatus ENSTTRG00000007039 I 0.774
Scrt2 Mus musculus ENSMUSG00000060257 I 0.774
ENSMMUG00000017354 Macaca mulatta ENSMMUG00000017354 I 0.774
ENSGGOG00000015228 Gorilla gorilla ENSGGOG00000015228 I 0.774
SCRT2 Loxodonta africana ENSLAFG00000030340 I 0.774
SCRT2 Cavia porcellus ENSCPOG00000008447 I 0.774
Scrt2 Rattus norvegicus ENSRNOG00000005148 I 0.774
CapteG149623 Capitella teleta CapteG149623 I 0.774
GJ16104 Drosophila virilis FBgn0203289 I 0.774
GI12763 Drosophila mojavensis FBgn0135520 I 0.774
SCRT2 Homo sapiens ENSG00000215397 D 0.774
ENSNLEG00000009420 Nomascus leucogenys ENSNLEG00000009420 I 0.774
SCRT2 Dasypus novemcinctus ENSDNOG00000002583 I 0.774
ENSCSAG00000010473 Chlorocebus sabaeus ENSCSAG00000010473 I 0.774
SCRT2 Otolemur garnettii ENSOGAG00000031187 I 0.774
SCRT2 Callithrix jacchus ENSCJAG00000020870 I 0.774
SCRT2 Felis catus ENSFCAG00000010922 I 0.774
ACYPI34938 Acyrthosiphon pisum ACYPI34938 I 0.773
MESCA005876 Megaselia scalaris MESCA005876 I 0.773
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.771
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.771
NEMVEDRAFT_v1g108258 Nematostella vectensis NEMVEDRAFT_v1g108258 I 0.771
D918_03987 Trichuris suis D918_03987 I 0.771
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.770
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.770
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.769
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.768
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.768
CapteG76620 Capitella teleta CapteG76620 I 0.767
CapteG176021 Capitella teleta CapteG176021 I 0.767
ECPE_0000958201 Echinostoma caproni ECPE_0000958201 I 0.765
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.765
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.765
D917_06340 Trichinella nativa D917_06340 I 0.765
EFV52761 Trichinella spiralis EFV52761 I 0.765
D915_06717 Fasciola hepatica D915_06717 I 0.765
Smp_054430 Schistosoma mansoni Smp_054430 I 0.763
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.763
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.763
PHUM474050 Pediculus humanus PHUM474050 I 0.763
Sjc_0100840 Schistosoma japonicum Sjc_0100840 I 0.763
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.763
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.763
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.763
T265_09545 Opisthorchis viverrini T265_09545 I 0.763
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.763
csin111588 Clonorchis sinensis csin111588 I 0.763
L889_g21793 Steinernema feltiae L889_g21793 I 0.763
L893_g27175 Steinernema glaseri L893_g27175 I 0.763
L898_g5709 Steinernema monticolum L898_g5709 I 0.763
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.763
A_07725 Schistosoma haematobium A_07725 I 0.763
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.763
L892_g9690 Steinernema scapterisci L892_g9690 I 0.761
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.761
BGIBMGA000604 Bombyx mori BGIBMGA000604 I 0.759
PXEA_0002510801 Protopolystoma xenopodis PXEA_0002510801 I 0.756