sall1a (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000074319 T091044_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be active in nucleus. Is expressed in several structures, including fin; nervous system; neural keel; neural tube; and tail bud. Human ortholog(s) of this gene implicated in Townes-Brocks syndrome and middle lobe syndrome. Orthologous to human SALL1 (spalt like transcription factor 1). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sall1
M10342_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SALL1_04 		0.811 0.967
Sall1
M10343_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SALL1_05 		0.811 0.967
Sall1
M10344_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SALL1_06 		0.811 0.967
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000102655 C2H2 ZF 443 465
ENSDARP00000102655 C2H2 ZF 471 493
ENSDARP00000102655 C2H2 ZF 722 744
ENSDARP00000102655 C2H2 ZF 754 776
ENSDARP00000102655 C2H2 ZF 990 1012
ENSDARP00000102655 C2H2 ZF 1018 1040
ENSDARP00000102655 C2H2 ZF 1123 1145
ENSDARP00000102655 C2H2 ZF 1151 1173

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

Invalid Input OrderBy

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action