PRDM16 (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000078324 T091099_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Prdm16
M08997_2.00
Mus musculus
BBCYCTGGGR

YCCCAGRGVV
Misc
Kulakovskiy et al.(2013)
PRD16_MOUSE.H11MO.0.B
0.804 0.956
PRDM16
M10223_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.778 0.925
PRDM16
M10224_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.778 0.925
PRDM16
M10225_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.778 0.925
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000080488 C2H2 ZF 232 253
ENSDARP00000080488 C2H2 ZF 281 303
ENSDARP00000080488 C2H2 ZF 309 331
ENSDARP00000080488 C2H2 ZF 337 360
ENSDARP00000080488 C2H2 ZF 366 388
ENSDARP00000080488 C2H2 ZF 394 416
ENSDARP00000080488 C2H2 ZF 423 444
ENSDARP00000080488 C2H2 ZF 980 1002
ENSDARP00000080488 C2H2 ZF 1008 1031
ENSDARP00000080488 C2H2 ZF 1037 1059
ENSDARP00000107731 C2H2 ZF 12 34
ENSDARP00000107731 C2H2 ZF 40 62
ENSDARP00000107731 C2H2 ZF 68 91
ENSDARP00000107731 C2H2 ZF 97 119
ENSDARP00000107731 C2H2 ZF 125 147
ENSDARP00000107731 C2H2 ZF 154 175
ENSDARP00000107731 C2H2 ZF 711 733
ENSDARP00000107731 C2H2 ZF 739 762
ENSDARP00000107731 C2H2 ZF 768 790

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSONIG00000002121 Oreochromis niloticus ENSONIG00000002121 I 0.815
ENSGMOG00000015664 Gadus morhua ENSGMOG00000015664 I 0.815
ENSAMXG00000014024 Astyanax mexicanus ENSAMXG00000014024 I 0.810
ENSPFOG00000010341 Poecilia formosa ENSPFOG00000010341 I 0.810
ENSXMAG00000019072 Xiphophorus maculatus ENSXMAG00000019072 I 0.810
si:ch211-263k4.2 Gasterosteus aculeatus ENSGACG00000006600 I 0.810
si:ch211-263k4.2 Oryzias latipes ENSORLG00000004492 I 0.810
Prdm16 Mus musculus ENSMUSG00000039410 D 0.804
Prdm16 Rattus norvegicus ENSRNOG00000045913 I 0.804
Aan_R005955 Calypte anna Aan_R005955 I 0.801
ENSFALG00000009580 Ficedula albicollis ENSFALG00000009580 I 0.801
Pvit_15789 Pogona vitticeps Pvit_15789 I 0.801
PRDM16 Pan troglodytes ENSPTRG00000000059 I 0.799
si:ch211-263k4.2 Tetraodon nigroviridis ENSTNIG00000011975 N 0.797
si:ch211-263k4.2 Takifugu rubripes ENSTRUG00000014772 N 0.797
ENSLOCG00000005336 Lepisosteus oculatus ENSLOCG00000005336 I 0.795
ENSMPUG00000007479 Mustela putorius furo ENSMPUG00000007479 I 0.791
PRDM16 Sus scrofa ENSSSCG00000021490 I 0.786
PRDM16 Otolemur garnettii ENSOGAG00000005055 I 0.782
PRDM16 Equus caballus ENSECAG00000017045 I 0.782
XP_002938538 Xenopus tropicalis XP_002938538 I 0.781
ENSPSIG00000004093 Pelodiscus sinensis ENSPSIG00000004093 I 0.781
ENSP00000417899-D2 Bos grunniens ENSP00000417899-D2 I 0.780
PRDM16 Loxodonta africana ENSLAFG00000001071 I 0.780
PRDM16 Bos taurus ENSBTAG00000018965 I 0.780
Alligator_sinensis_CCG011602.1 Alligator sinensis Alligator_sinensis_CCG011602.1 I 0.779
Brh_R007819 Buceros rhinoceros Brh_R007819 I 0.779
Gfo_R009744 Geospiza fortis Gfo_R009744 I 0.779
ENSGALG00000001063 Gallus gallus ENSGALG00000001063 I 0.779
Afo_R003306 Aptenodytes forsteri Afo_R003306 I 0.779
PRDM16 Meleagris gallopavo ENSMGAG00000001857 I 0.779
ENSAPLG00000005898 Anas platyrhynchos ENSAPLG00000005898 I 0.779
ENSPPYG00000001968 Pongo abelii ENSPPYG00000001968 I 0.778
PRDM16 Gorilla gorilla ENSGGOG00000003763 I 0.778
PRDM16 Macaca mulatta ENSMMUG00000009350 I 0.778
ENSP00000270722 Macaca fascicularis ENSP00000270722 I 0.778
PRDM16 Homo sapiens ENSG00000142611 D 0.778
PRDM16 Canis familiaris ENSCAFG00000019473 I 0.775
Ogr15306 Ophisaurus gracilis Ogr15306 I 0.758