CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM16
(
Danio rerio
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSDARG00000078324
T091099_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.778
0.925
Prdm16
M08997_2.00
Mus musculus
BBCYCTGGGR
YCCCAGRGVV
Misc
Kulakovskiy et al.(2013)
PRD16_MOUSE.H11MO.0.B
0.804
0.956
PRDM16
M10224_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.778
0.925
PRDM16
M10225_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.778
0.925
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000080488
C2H2 ZF
232
253
YRCEHCDELFTSKLELRRHQKY
ENSDARP00000080488
C2H2 ZF
281
303
HECKDCEKIFPSEYSLGQHMIVH
ENSDARP00000080488
C2H2 ZF
309
331
YKCDQCPKAFNWKSNLIRHQMSH
ENSDARP00000080488
C2H2 ZF
337
360
FECENCDKVFTDPSNLQRHIRSQH
ENSDARP00000080488
C2H2 ZF
366
388
HTCPECGKTFATSSGLKQHKHIH
ENSDARP00000080488
C2H2 ZF
394
416
FSCEVCHKSYTQFSNLCRHKRMH
ENSDARP00000080488
C2H2 ZF
423
444
IKCKDCGQMFSTTSSLNKHRRF
ENSDARP00000080488
C2H2 ZF
980
1002
YTCRYCGKIFPRSANLTRHLRTH
ENSDARP00000080488
C2H2 ZF
1008
1031
YRCKYCDRSFSISSNLQRHVRNIH
ENSDARP00000080488
C2H2 ZF
1037
1059
FKCHLCNRCFGQQTNLDRHLKKH
ENSDARP00000107731
C2H2 ZF
12
34
HECKDCEKIFPSEYSLGQHMIVH
ENSDARP00000107731
C2H2 ZF
40
62
YKCDQCPKAFNWKSNLIRHQMSH
ENSDARP00000107731
C2H2 ZF
68
91
FECENCDKVFTDPSNLQRHIRSQH
ENSDARP00000107731
C2H2 ZF
97
119
HTCPECGKTFATSSGLKQHKHIH
ENSDARP00000107731
C2H2 ZF
125
147
FSCEVCHKSYTQFSNLCRHKRMH
ENSDARP00000107731
C2H2 ZF
154
175
IKCKDCGQMFSTTSSLNKHRRF
ENSDARP00000107731
C2H2 ZF
711
733
YTCRYCGKIFPRSANLTRHLRTH
ENSDARP00000107731
C2H2 ZF
739
762
YRCKYCDRSFSISSNLQRHVRNIH
ENSDARP00000107731
C2H2 ZF
768
790
FKCHLCNRCFGQQTNLDRHLKKH
Links
Other
C2H2 ZF
family TFs
Other
Danio rerio
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSONIG00000002121
Oreochromis niloticus
ENSONIG00000002121
I
0.815
ENSGMOG00000015664
Gadus morhua
ENSGMOG00000015664
I
0.815
ENSAMXG00000014024
Astyanax mexicanus
ENSAMXG00000014024
I
0.810
ENSPFOG00000010341
Poecilia formosa
ENSPFOG00000010341
I
0.810
ENSXMAG00000019072
Xiphophorus maculatus
ENSXMAG00000019072
I
0.810
si:ch211-263k4.2
Gasterosteus aculeatus
ENSGACG00000006600
I
0.810
si:ch211-263k4.2
Oryzias latipes
ENSORLG00000004492
I
0.810
Prdm16
Mus musculus
ENSMUSG00000039410
D
0.804
Prdm16
Rattus norvegicus
ENSRNOG00000045913
I
0.804
Aan_R005955
Calypte anna
Aan_R005955
I
0.801
ENSFALG00000009580
Ficedula albicollis
ENSFALG00000009580
I
0.801
Pvit_15789
Pogona vitticeps
Pvit_15789
I
0.801
PRDM16
Pan troglodytes
ENSPTRG00000000059
I
0.799
si:ch211-263k4.2
Tetraodon nigroviridis
ENSTNIG00000011975
N
0.797
si:ch211-263k4.2
Takifugu rubripes
ENSTRUG00000014772
N
0.797
ENSLOCG00000005336
Lepisosteus oculatus
ENSLOCG00000005336
I
0.795
ENSMPUG00000007479
Mustela putorius furo
ENSMPUG00000007479
I
0.791
PRDM16
Sus scrofa
ENSSSCG00000021490
I
0.786
PRDM16
Otolemur garnettii
ENSOGAG00000005055
I
0.782
PRDM16
Equus caballus
ENSECAG00000017045
I
0.782
XP_002938538
Xenopus tropicalis
XP_002938538
I
0.781
ENSPSIG00000004093
Pelodiscus sinensis
ENSPSIG00000004093
I
0.781
ENSP00000417899-D2
Bos grunniens
ENSP00000417899-D2
I
0.780
PRDM16
Loxodonta africana
ENSLAFG00000001071
I
0.780
PRDM16
Bos taurus
ENSBTAG00000018965
I
0.780
Alligator_sinensis_CCG011602.1
Alligator sinensis
Alligator_sinensis_CCG011602.1
I
0.779
Brh_R007819
Buceros rhinoceros
Brh_R007819
I
0.779
Gfo_R009744
Geospiza fortis
Gfo_R009744
I
0.779
ENSGALG00000001063
Gallus gallus
ENSGALG00000001063
I
0.779
Afo_R003306
Aptenodytes forsteri
Afo_R003306
I
0.779
PRDM16
Meleagris gallopavo
ENSMGAG00000001857
I
0.779
ENSAPLG00000005898
Anas platyrhynchos
ENSAPLG00000005898
I
0.779
ENSPPYG00000001968
Pongo abelii
ENSPPYG00000001968
I
0.778
PRDM16
Gorilla gorilla
ENSGGOG00000003763
I
0.778
PRDM16
Macaca mulatta
ENSMMUG00000009350
I
0.778
ENSP00000270722
Macaca fascicularis
ENSP00000270722
I
0.778
PRDM16
Homo sapiens
ENSG00000142611
D
0.778
PRDM16
Canis familiaris
ENSCAFG00000019473
I
0.775
Ogr15306
Ophisaurus gracilis
Ogr15306
I
0.758