CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zfp647
(
Dipodomys ordii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSDORG00000003353
T092708_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF250
M04619_2.00
Homo sapiens
NYASGCCYAY
RTRGGCSTRN
SELEX
Yin et al.(2017)
ZNF250_eDBD_HT-SELEX
0.815
0.970
ZNF250
M08370_2.00
Homo sapiens
CYYTGCAGB
VCTGCARRG
ChIP-seq
Schmitges et al.(2016)
P15622_1-3.RCADE
0.815
0.970
ZNF250
M08944_2.00
Homo sapiens
TACCATRCTGTTTTGRTTAC
GTAAYCAAAACAGYATGGTA
Misc
Kulakovskiy et al.(2013)
ZN250_HUMAN.H11MO.0.C
0.815
0.970
ZNF250
M04620_2.00
Homo sapiens
NTAGGCCTAN
NTAGGCCTAN
SELEX
Yin et al.(2017)
ZNF250_eDBD_Methyl-HT-SELEX
0.815
0.970
ZNF250
M08264_2.00
Homo sapiens
YVDTGCAHTTTTBNB
VNVAAAADTGCAHBR
ChIP-seq
Najafabadi et al.(2015b)
ZNF250
0.815
0.963
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000003135
C2H2 ZF
177
199
YMCIQCGKCFSRSSHLLQHQRIH
ENSDORP00000003135
C2H2 ZF
205
227
YVCNICGKAFSQSSVLSKHRRIH
ENSDORP00000003135
C2H2 ZF
233
255
YECNECGKAFRVSSDLAQHHKIH
ENSDORP00000003135
C2H2 ZF
261
283
HECLECRKAFTQLSHLIQHQRIH
ENSDORP00000003135
C2H2 ZF
289
311
YVCPLCGKAFNHSTVLRSHQRVH
ENSDORP00000003135
C2H2 ZF
319
339
CSECGKTFSVKRTLLQHQRVH
ENSDORP00000003135
C2H2 ZF
345
367
YTCSECGKAFSDRSVLIQHHNVH
ENSDORP00000003135
C2H2 ZF
373
395
YECSECGKTFSHRSTLMNHERIH
ENSDORP00000003135
C2H2 ZF
401
423
YACYECGKAFVQHSHLIQHQRVH
ENSDORP00000003135
C2H2 ZF
429
451
YVCGECGHAFSARRSLVQHERIH
ENSDORP00000003135
C2H2 ZF
457
479
FQCTECGKSFSLKATLIVHLRTH
ENSDORP00000003135
C2H2 ZF
485
507
YECNSCGKAFSQYSVLIQHQRIH
ENSDORP00000003135
C2H2 ZF
513
535
YECGECGRAFNQHGHLIQHQKVH
Links
Other
C2H2 ZF
family TFs
Other
Dipodomys ordii
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy