CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zfp354a
(
Dipodomys ordii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSDORG00000009396
T092809_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF354A
M08331_2.00
Homo sapiens
RTTTARDCCATTTAY
RTAAATGGHYTAAAY
ChIP-seq
Schmitges et al.(2016)
O60765_5-9.RCADE
0.820
0.973
ZNF354A
M07622_2.00
Homo sapiens
RTTTARHCCATTTAC
GTAAATGGDYTAAAY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF354A.RCADE.OriginalMapping
0.820
0.973
ZNF354A
M08914_2.00
Homo sapiens
DTTYHDNYCHTTTMYWTTTADTGW
WCAHTAAAWRKAAADGRNHDRAAH
Misc
Kulakovskiy et al.(2013)
Z354A_HUMAN.H11MO.0.C
0.820
0.973
ZNF354B
M07653_2.00
Homo sapiens
RDWTAKYYCMTT
AAKGRRMTAWHY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF354B.RCADE.ReprocessedData
0.773
0.916
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000008824
C2H2 ZF
197
219
YQCSICEKTFINTSSLRKHEKNH
ENSDORP00000008824
C2H2 ZF
225
247
FKCKECSKAFNQSSALIQHQITH
ENSDORP00000008824
C2H2 ZF
253
275
YICKECGKAFTLSTSLYKHLRTH
ENSDORP00000008824
C2H2 ZF
281
303
YRCKECGKAFGRRSGLFIHQKIH
ENSDORP00000008824
C2H2 ZF
336
358
YLCNECGNTFKSSSSLRYHQRIH
ENSDORP00000008824
C2H2 ZF
364
386
FKCSECGRAFSQSASLIQHERIH
ENSDORP00000008824
C2H2 ZF
392
414
YRCTECGKGFTSISRLNRHRIIH
ENSDORP00000008824
C2H2 ZF
420
442
YNCNECGKALSSHSTLIIHERIH
ENSDORP00000008824
C2H2 ZF
448
470
CKCKVCGKAFRQSSALIQHQRMH
ENSDORP00000008824
C2H2 ZF
476
498
YKCNECGKTFRCNSSLSNHQRIH
ENSDORP00000008824
C2H2 ZF
504
526
YRCEECGMSFGQSSALIQHRRIH
ENSDORP00000008824
C2H2 ZF
532
554
FKCNTCGKTFRQSSSRIAHQRIH
ENSDORP00000008824
C2H2 ZF
560
582
YECNTCGKLFNHRSSLTNHYKTH
Links
Other
C2H2 ZF
family TFs
Other
Dipodomys ordii
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy