CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSEEUG00000003860
(
Erinaceus europaeus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSEEUG00000003860
T093537_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF449
M04560_2.00
Homo sapiens
NTGYTKGCWCGCGAB
VTCGCGWGCMARCAN
SELEX
Yin et al.(2017)
ZNF449_eDBD_HT-SELEX_1
0.826
0.994
ZNF449
M04561_2.00
Homo sapiens
RCGCCCAACC
GGTTGGGCGY
SELEX
Yin et al.(2017)
ZNF449_eDBD_HT-SELEX_2
0.826
0.994
ZNF449
M08344_2.00
Homo sapiens
NNVAGCCCARCCHNNNNNNNN
NNNNNNNNDGGYTGGGCTBNN
ChIP-seq
Schmitges et al.(2016)
Q6P9G9_1-7.RCADE
0.826
0.994
ZNF449
M08922_2.00
Homo sapiens
VAGCCCARCCN
NGGYTGGGCTB
Misc
Kulakovskiy et al.(2013)
ZN449_HUMAN.H11MO.0.C
0.826
0.994
ZNF449
M04562_2.00
Homo sapiens
MMGCCCMACC
GGTKGGGCKK
SELEX
Yin et al.(2017)
ZNF449_eDBD_Methyl-HT-SELEX_1
0.826
0.994
ZNF449
M04563_2.00
Homo sapiens
NTGYTKGCDCGCGWB
VWCGCGHGCMARCAN
SELEX
Yin et al.(2017)
ZNF449_eDBD_Methyl-HT-SELEX_2
0.826
0.994
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000003498
C2H2 ZF
323
345
HRCPQCGKCFARKSQLTGHQRIH
ENSEEUP00000003498
C2H2 ZF
351
373
HKCPECGKRFLRSSDLYRHQRLH
ENSEEUP00000003498
C2H2 ZF
379
401
YECTVCKKRFTRRSHLIGHQRTH
ENSEEUP00000003498
C2H2 ZF
407
429
YKCLECGKSFCHGSSLKRHLKTH
ENSEEUP00000003498
C2H2 ZF
435
457
HRCHNCGKSFSRLTALTLHQRTH
ENSEEUP00000003498
C2H2 ZF
463
485
FKCNYCGKSFRQRPSLVIHLRIH
ENSEEUP00000003498
C2H2 ZF
491
513
YKCSHCSKSFRQRAGLIMHQVTH
Links
Other
C2H2 ZF
family TFs
Other
Erinaceus europaeus
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy