CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM1
(
Homo sapiens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSG00000057657
T094789_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM1
M02731_2.00
Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR
SELEX
Jolma et al.(2010)
PRDM1_dimer
(Direct)
(Direct)
PRDM1
M02874_2.00
Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN
SELEX
Jolma et al.(2013)
PRDM1_1
(Direct)
(Direct)
PRDM1
M04396_2.00
Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN
SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX
(Direct)
(Direct)
PRDM1
M04397_2.00
Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN
SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX
(Direct)
(Direct)
PRDM1
M07845_2.00
Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford
(Direct)
(Direct)
PRDM1
M08083_2.00
Homo sapiens
NHACTTTCHY
RDGAAAGTDN
ChIP-seq
Mathelier et al.(2014)
MA0508.2
(Direct)
(Direct)
PRDM1
M08191_2.00
Homo sapiens
ACTTTCAC
GTGAAAGT
ChIP-seq
Contrino et al.(2012)
Mv110
(Direct)
(Direct)
PRDM1
M08192_2.00
Homo sapiens
HRTCACTTT
AAAGTGAYD
ChIP-seq
Contrino et al.(2012)
Mv112
(Direct)
(Direct)
PRDM1
M08276_2.00
Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD
ChIP-seq
Schmitges et al.(2016)
O75626.MEME
(Direct)
(Direct)
PRDM1
M08854_2.00
Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A
(Direct)
(Direct)
PRDM1
M09500_2.00
Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT
Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477
(Direct)
(Direct)
PRDM1
M10108_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q4
(Direct)
(Direct)
PRDM1
M10109_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01
(Direct)
(Direct)
PRDM1
M10110_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6
(Direct)
(Direct)
PRDM1
M10111_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM1_03
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Prdm1
M08995_2.00
Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A
0.825
0.982
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000358085
C2H2 ZF
441
463
YECNVCAKTFGQLSNLKVHLRVH
ENSP00000358085
C2H2 ZF
469
491
FKCQTCNKGFTQLAHLQKHYLVH
ENSP00000358085
C2H2 ZF
497
519
HECQVCHKRFSSTSNLKTHLRLH
ENSP00000358085
C2H2 ZF
525
547
YQCKVCPAKFTQFVHLKLHKRLH
ENSP00000358085
C2H2 ZF
553
574
HKCSQCHKNYIHLCSLKVHLKG
ENSP00000358087
C2H2 ZF
539
561
YECNVCAKTFGQLSNLKVHLRVH
ENSP00000358087
C2H2 ZF
567
589
FKCQTCNKGFTQLAHLQKHYLVH
ENSP00000358087
C2H2 ZF
595
617
HECQVCHKRFSSTSNLKTHLRLH
ENSP00000358087
C2H2 ZF
623
645
YQCKVCPAKFTQFVHLKLHKRLH
ENSP00000358087
C2H2 ZF
651
672
HKCSQCHKNYIHLCSLKVHLKG
ENSP00000358092
C2H2 ZF
575
597
YECNVCAKTFGQLSNLKVHLRVH
ENSP00000358092
C2H2 ZF
603
625
FKCQTCNKGFTQLAHLQKHYLVH
ENSP00000358092
C2H2 ZF
631
653
HECQVCHKRFSSTSNLKTHLRLH
ENSP00000358092
C2H2 ZF
659
681
YQCKVCPAKFTQFVHLKLHKRLH
ENSP00000358092
C2H2 ZF
687
708
HKCSQCHKNYIHLCSLKVHLKG
ENSP00000478294
C2H2 ZF
538
560
YECNVCAKTFGQLSNLKVHLRVH
ENSP00000478294
C2H2 ZF
566
588
FKCQTCNKGFTQLAHLQKHYLVH
ENSP00000478294
C2H2 ZF
594
616
HECQVCHKRFSSTSNLKTHLRLH
ENSP00000478294
C2H2 ZF
622
644
YQCKVCPAKFTQFVHLKLHKRLH
ENSP00000478294
C2H2 ZF
650
671
HKCSQCHKNYIHLCSLKVHLKG
Links
Other
C2H2 ZF
family TFs
Other
Homo sapiens
TFs
43 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy