ZNF549 (Homo sapiens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSG00000121406 T094875_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF549
M07576_2.00		 Homo sapiens
KGCTGCCCRRTTCAT
ATGAAYYGGGCAGCM		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF549.RCADE.OriginalMapping		 (Direct) (Direct)
ZNF549
M08300_2.00		 Homo sapiens
CTGCCCRRTTCAT
ATGAAYYGGGCAG		 ChIP-seq
Schmitges et al.(2016)
Q6P9A3.MEME		 (Direct) (Direct)
ZNF549
M08883_2.00		 Homo sapiens
NKGCTGCCCDRTYSMTGAHW
WDTCAKSRAYHGGGCAGCMN		 Misc
Kulakovskiy et al.(2013)
ZN549_HUMAN.H11MO.0.C		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000240719 C2H2 ZF 209 228
ENSP00000240719 C2H2 ZF 240 256
ENSP00000240719 C2H2 ZF 262 285
ENSP00000240719 C2H2 ZF 291 313
ENSP00000240719 C2H2 ZF 319 342
ENSP00000240719 C2H2 ZF 348 370
ENSP00000240719 C2H2 ZF 376 398
ENSP00000240719 C2H2 ZF 404 426
ENSP00000240719 C2H2 ZF 432 454
ENSP00000240719 C2H2 ZF 460 482
ENSP00000240719 C2H2 ZF 488 510
ENSP00000240719 C2H2 ZF 516 538
ENSP00000240719 C2H2 ZF 544 566
ENSP00000240719 C2H2 ZF 572 594
ENSP00000240719 C2H2 ZF 600 622
ENSP00000365407 C2H2 ZF 222 241
ENSP00000365407 C2H2 ZF 253 269
ENSP00000365407 C2H2 ZF 275 298
ENSP00000365407 C2H2 ZF 304 326
ENSP00000365407 C2H2 ZF 332 355
ENSP00000365407 C2H2 ZF 361 383
ENSP00000365407 C2H2 ZF 389 411
ENSP00000365407 C2H2 ZF 417 439
ENSP00000365407 C2H2 ZF 445 467
ENSP00000365407 C2H2 ZF 473 495
ENSP00000365407 C2H2 ZF 501 523
ENSP00000365407 C2H2 ZF 529 551
ENSP00000365407 C2H2 ZF 557 579
ENSP00000365407 C2H2 ZF 585 607
ENSP00000365407 C2H2 ZF 613 635

Links

Other C2H2 ZF family TFs
Other Homo sapiens TFs

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8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action