CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PRDM5
(
Homo sapiens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSG00000138738
T094938_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
The protein encoded by this gene is a transcription factor of the PR-domain protein family. It contains a PR-domain and multiple zinc finger motifs. Transcription factors of the PR-domain family are known to be involved in cell differentiation and tumorigenesis. [provided by RefSeq, Jul 2008]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Prdm5
M08986_2.00
Mus musculus
DCCHBSHBCTCCHKB
VMDGGAGVDSVDGGH
Misc
Kulakovskiy et al.(2013)
PRDM5_MOUSE.H11MO.0.A
0.770
0.948
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000264808
C2H2 ZF
167
190
YACPQCESSFTSEDILAEHLQTLH
ENSP00000264808
C2H2 ZF
199
220
FKCKNCGKKFPVKQALQRHVLQ
ENSP00000264808
C2H2 ZF
234
255
FQCSVCNSSFSSASSFEQHQET
ENSP00000264808
C2H2 ZF
262
287
FVCKADSCGKRLKSKDALKRHQENVH
ENSP00000264808
C2H2 ZF
295
317
LICSVCNKKCSSASSLQEHRKIH
ENSP00000264808
C2H2 ZF
320
342
FDCQECMKKFISANQLKRHMITH
ENSP00000264808
C2H2 ZF
348
370
YNCEICNKSFKRLDQVGAHKVIH
ENSP00000264808
C2H2 ZF
376
398
YKCKLCGKGFAHRNVYKNHKKTH
ENSP00000264808
C2H2 ZF
404
426
FQCEECKALFRTPFSLQRHLLIH
ENSP00000264808
C2H2 ZF
432
455
FKCHHCDATFKRKDTLNVHVQVVH
ENSP00000264808
C2H2 ZF
461
483
YRCELCNKAFVTPSVLRSHKKTH
ENSP00000264808
C2H2 ZF
490
511
ICPYCGQKFASSGTLRVHIRSH
ENSP00000264808
C2H2 ZF
517
539
YQCPYCEKGFSKNDGLKMHIRTH
ENSP00000264808
C2H2 ZF
545
567
YKCSECSKAFSQKRGLDEHKRTH
ENSP00000264808
C2H2 ZF
573
595
FQCDVCDLAFSLKKMLIRHKMTH
ENSP00000264808
C2H2 ZF
603
625
ECQFCHKKFTRNDYLKVHMDNIH
ENSP00000404832
C2H2 ZF
167
190
YACPQCESSFTSEDILAEHLQTLH
ENSP00000404832
C2H2 ZF
199
221
FKCKNCGKKFPVKQALQRHFEQH
ENSP00000404832
C2H2 ZF
231
256
FVCKADSCGKRLKSKDALKRHQENVH
ENSP00000404832
C2H2 ZF
264
286
LICSVCNKKCSSASSLQEHRKIH
ENSP00000404832
C2H2 ZF
289
311
FDCQECMKKFISANQLKRHMITH
ENSP00000404832
C2H2 ZF
317
339
YNCEICNKSFKRLDQVGAHKVIH
ENSP00000404832
C2H2 ZF
345
367
YKCKLCGKGFAHRNVYKNHKKTH
ENSP00000404832
C2H2 ZF
373
395
FQCEECKALFRTPFSLQRHLLIH
ENSP00000404832
C2H2 ZF
401
424
FKCHHCDATFKRKDTLNVHVQVVH
ENSP00000404832
C2H2 ZF
430
452
YRCELCNKAFVTPSVLRSHKKTH
ENSP00000404832
C2H2 ZF
459
480
ICPYCGQKFASSGTLRVHIRSH
ENSP00000404832
C2H2 ZF
486
508
YQCPYCEKGFSKNDGLKMHIRTH
ENSP00000404832
C2H2 ZF
514
536
YKCSECSKAFSQKRGLDEHKRTH
ENSP00000404832
C2H2 ZF
542
564
FQCDVCDLAFSLKKMLIRHKMTH
ENSP00000404832
C2H2 ZF
572
594
ECQFCHKKFTRNDYLKVHMDNIH
ENSP00000422309
C2H2 ZF
167
190
YACPQCESSFTSEDILAEHLQTLH
ENSP00000422309
C2H2 ZF
199
221
FKCKNCGKKFPVKQALQRHFEQH
ENSP00000422309
C2H2 ZF
231
256
FVCKADSCGKRLKSKDALKRHQENVH
ENSP00000422309
C2H2 ZF
264
286
LICSVCNKKCSSASSLQEHRKIH
ENSP00000422309
C2H2 ZF
289
311
FDCQECMKKFISANQLKRHMITH
ENSP00000422309
C2H2 ZF
317
339
YNCEICNKSFKRLDQVGAHKVIH
ENSP00000422309
C2H2 ZF
345
367
YKCKLCGKGFAHRNVYKNHKKTH
ENSP00000422309
C2H2 ZF
373
395
FQCEECKALFRTPFSLQRHLLIH
ENSP00000422309
C2H2 ZF
401
424
FKCHHCDATFKRKDTLNVHVQVVH
ENSP00000422309
C2H2 ZF
430
452
YRCELCNKAFVTPSVLRSHKKTH
ENSP00000422309
C2H2 ZF
459
480
ICPYCGQKFASSGTLRVHIRSH
ENSP00000424861
C2H2 ZF
11
34
YACPQCESSFTSEDILAEHLQTLH
ENSP00000424861
C2H2 ZF
43
64
FKCKNCGKKFPVKQALQRHVLQ
ENSP00000424861
C2H2 ZF
78
99
FQCSVCNSSFSSASSFEQHQET
ENSP00000424861
C2H2 ZF
106
131
FVCKADSCGKRLKSKDALKRHQENVH
Links
Other
C2H2 ZF
family TFs
Other
Homo sapiens
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy