CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ZIM3
(
Homo sapiens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSG00000141946
T094945_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZIM3
M07591_2.00
Homo sapiens
RGVTTTCTGTTK
MAACAGAAABCY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZIM3.RCADE.OriginalMapping
(Direct)
(Direct)
ZIM3
M08312_2.00
Homo sapiens
NNKRGNTTTCTGTTDNYN
NRNHAACAGAAANCYMNN
ChIP-seq
Schmitges et al.(2016)
Q96PE6_5-10.RCADE
(Direct)
(Direct)
ZIM3
M08895_2.00
Homo sapiens
NKRGNTTTCTGTTDHYNNH
DNNRDHAACAGAAANCYMN
Misc
Kulakovskiy et al.(2013)
ZIM3_HUMAN.H11MO.0.C
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000269834
C2H2 ZF
167
189
LKCNACRKLFSSKSRLQSHLRRH
ENSP00000269834
C2H2 ZF
195
217
FECHSCGRAFGEKWKLDKHQKTH
ENSP00000269834
C2H2 ZF
223
245
YKCENCGNAYKQKSNLFQHQKMH
ENSP00000269834
C2H2 ZF
251
273
YQCKTCGKAFSWKSSCINHEKIH
ENSP00000269834
C2H2 ZF
279
301
YQCNECEKSFRQNSTLIQHKKVH
ENSP00000269834
C2H2 ZF
307
329
FQCTDCGKAFIYKSDLVKHQRIH
ENSP00000269834
C2H2 ZF
335
357
YKCSICEKAFSQKSNVIDHEKIH
ENSP00000269834
C2H2 ZF
363
385
YECDLCGNTFIQKKNLIQHKKIH
ENSP00000269834
C2H2 ZF
391
413
YECNRCGKAFFQKSNLHSHQKTH
ENSP00000269834
C2H2 ZF
419
441
YRCSECGKTFIRKLNLSLHKKTH
ENSP00000269834
C2H2 ZF
447
470
YGCSECGKAFADRSYLVRHQKRIH
Links
Other
C2H2 ZF
family TFs
Other
Homo sapiens
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy