CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BCL6B
(
Homo sapiens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSG00000161940
T095014_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including regulation of gene expression; regulation of inflammatory response; and type 2 immune response. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL6B
M02896_2.00
Homo sapiens
TGCTTTCTAGGAATTMM
KKAATTCCTAGAAAGCA
SELEX
Jolma et al.(2013)
BCL6B_1
(Direct)
(Direct)
BCL6B
M04499_2.00
Homo sapiens
NNGCTTTCKAGGAAHN
NDTTCCTMGAAAGCNN
SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_1
(Direct)
(Direct)
BCL6B
M04500_2.00
Homo sapiens
NDTTCCTCGATTRCVN
NBGYAATCGAGGAAHN
SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_2
(Direct)
(Direct)
BCL6B
M04501_2.00
Homo sapiens
NHGCTTTCTAGGAAHN
NDTTCCTAGAAAGCDN
SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_1
(Direct)
(Direct)
BCL6B
M04502_2.00
Homo sapiens
NWTTCCTAGATTACRN
NYGTAATCTAGGAAWN
SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_2
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Bcl6b
M00128_2.00
Mus musculus
NYYYTYCYWNNN
NNNWRGRARRRN
PBM
Badis et al.(2009)
Bcl6b_0961
0.818
0.983
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000293805
C2H2 ZF
328
350
YKCQLCRSSFRYKGNLASHRTVH
ENSP00000293805
C2H2 ZF
356
378
YHCSICGARFNRPANLKTHSRIH
ENSP00000293805
C2H2 ZF
384
406
YKCETCGSRFVQVAHLRAHVLIH
ENSP00000293805
C2H2 ZF
412
434
YPCPTCGTRFRHLQTLKSHVRIH
ENSP00000293805
C2H2 ZF
440
463
YHCDPCGLHFRHKSQLRLHLRQKH
ENSP00000445010
C2H2 ZF
17
39
YKCQLCRSSFRYKGNLASHRTVH
ENSP00000445010
C2H2 ZF
45
67
YHCSICGARFNRPANLKTHSRIH
ENSP00000445010
C2H2 ZF
73
95
YKCETCGSRFVQVAHLRAHVLIH
ENSP00000445010
C2H2 ZF
101
123
YPCPTCGTRFRHLQTLKSHVRIH
Links
Other
C2H2 ZF
family TFs
Other
Homo sapiens
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy