gli1 (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000006458 T095600_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gli3
M01022_2.00 		Mus musculus
NGACCACCCNN
NNGGGTGGTCN		 PBM
Peterson et al.(2012)
Gli3 		0.820 0.939
Gli3
M08023_2.00 		Mus musculus
RGVCCACCCAS
STGGGTGGBCY		 ChIP-seq
Chen et al.(2011)
GSE11062_Gli3 		0.820 0.939
Gli3
M09512_2.00 		Mus musculus
RGACCACCCASR
YSTGGGTGGTCY		 Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077 		0.820 0.939
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.773 0.930
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.773 0.930
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.773 0.930
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.773 0.930
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.773 0.930
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.773 0.930
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.759 0.913
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.759 0.913
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.759 0.913
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.759 0.913
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.759 0.913
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.759 0.913
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.759 0.913
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.759 0.913
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.759 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000008538 C2H2 ZF 320 345
ENSGACP00000008538 C2H2 ZF 353 380
ENSGACP00000008538 C2H2 ZF 386 410
ENSGACP00000008538 C2H2 ZF 416 441
ENSGACP00000008538 C2H2 ZF 447 472
ENSGACP00000008543 C2H2 ZF 223 248
ENSGACP00000008543 C2H2 ZF 256 283
ENSGACP00000008543 C2H2 ZF 289 313
ENSGACP00000008543 C2H2 ZF 319 344
ENSGACP00000008543 C2H2 ZF 350 375

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gli1 Takifugu rubripes ENSTRUG00000014998 I 0.827
ENSGMOG00000007975 Gadus morhua ENSGMOG00000007975 I 0.827
gli1 Tetraodon nigroviridis ENSTNIG00000007058 I 0.825
gli1 Oryzias latipes ENSORLG00000005455 I 0.825
ENSPFOG00000006269 Poecilia formosa ENSPFOG00000006269 I 0.825
ENSONIG00000005084 Oreochromis niloticus ENSONIG00000005084 I 0.825
ENSXMAG00000017965 Xiphophorus maculatus ENSXMAG00000017965 I 0.825
ENSSTOG00000020844 Ictidomys tridecemlineatus ENSSTOG00000020844 I 0.820
Gli3 Rattus norvegicus ENSRNOG00000014395 I 0.820
Gli3 Mus musculus ENSMUSG00000021318 D 0.820
GLI3 Cavia porcellus ENSCPOG00000013233 I 0.820
ENSLOCG00000002028 Lepisosteus oculatus ENSLOCG00000002028 I 0.817
ENSONIG00000004472 Oreochromis niloticus ENSONIG00000004472 I 0.817
ENSONIG00000003608 Oreochromis niloticus ENSONIG00000003608 I 0.815
ENSPFOG00000014778 Poecilia formosa ENSPFOG00000014778 I 0.814
ENSGMOG00000010335 Gadus morhua ENSGMOG00000010335 I 0.814
gli2.S Xenopus laevis XB-GENE-6251939 I 0.813
gli2a Danio rerio ENSDARG00000025641 I 0.813
fgenesh2_pg.scaffold_169000072 Branchiostoma floridae fgenesh2_pg.scaffold_169000072 I 0.809
fgenesh2_pg.scaffold_137000068 Branchiostoma floridae fgenesh2_pg.scaffold_137000068 I 0.809
gli2.L Xenopus laevis XB-GENE-17342592 I 0.808
gli2b Gasterosteus aculeatus ENSGACG00000001547 I 0.807
gli2b Takifugu rubripes ENSTRUG00000001954 I 0.807
ENSAMXG00000017236 Astyanax mexicanus ENSAMXG00000017236 I 0.779
ENSAMXG00000002477 Astyanax mexicanus ENSAMXG00000002477 I 0.776
Pvit_05813 Pogona vitticeps Pvit_05813 I 0.776
ENSLOCG00000005938 Lepisosteus oculatus ENSLOCG00000005938 I 0.776
GLI1 Anolis carolinensis ENSACAG00000006541 I 0.776
gli3 Danio rerio ENSDARG00000052131 I 0.776
ENSLACG00000017364 Latimeria chalumnae ENSLACG00000017364 I 0.774
ENSAPLG00000005128 Anas platyrhynchos ENSAPLG00000005128 I 0.774
Tal_R009020 Tyto alba Tal_R009020 I 0.774
Gfo_R013682 Geospiza fortis Gfo_R013682 I 0.774
ENSNLEG00000003160 Nomascus leucogenys ENSNLEG00000003160 I 0.773
GLI3 Ornithorhynchus anatinus ENSOANG00000010699 I 0.773
ENSMPUG00000018143 Mustela putorius furo ENSMPUG00000018143 I 0.773
GLI3 Otolemur garnettii ENSOGAG00000012651 I 0.773
GLI3 Oryctolagus cuniculus ENSOCUG00000006563 I 0.773
ENSOARG00000017420 Ovis aries ENSOARG00000017420 I 0.773
Gfo_R007869 Geospiza fortis Gfo_R007869 I 0.773
ENSPPYG00000017613 Pongo abelii ENSPPYG00000017613 I 0.773
Brh_R008256 Buceros rhinoceros Brh_R008256 I 0.773
ENSSHAG00000009727 Sarcophilus harrisii ENSSHAG00000009727 I 0.773
Afo_R007816 Aptenodytes forsteri Afo_R007816 I 0.773
GLI3 Tupaia belangeri ENSTBEG00000006673 I 0.773
GLI3 Tursiops truncatus ENSTTRG00000003628 I 0.773
ENSTSYG00000009406 Tarsius syrichta ENSTSYG00000009406 I 0.773
Cmyd_10007839 Chelonia mydas Cmyd_10007839 I 0.773
GLI3 Pteropus vampyrus ENSPVAG00000015920 I 0.773
ENSP00000379258 Macaca fascicularis ENSP00000379258 I 0.773
ENSPANG00000014545 Papio anubis ENSPANG00000014545 I 0.773
GLI3 Procavia capensis ENSPCAG00000015092 I 0.773
GLI3 Monodelphis domestica ENSMODG00000002714 I 0.773
GLI3 Pan troglodytes ENSPTRG00000019117 I 0.773
ENSPSIG00000017804 Pelodiscus sinensis ENSPSIG00000017804 I 0.773
GLI3 Ochotona princeps ENSOPRG00000011225 I 0.773
GLI3 Myotis lucifugus ENSMLUG00000015711 I 0.773
ENSCSAG00000015361 Chlorocebus sabaeus ENSCSAG00000015361 I 0.773
GLI3 Callithrix jacchus ENSCJAG00000007690 I 0.773
GLI3 Choloepus hoffmanni ENSCHOG00000003774 I 0.773
GLI3 Dasypus novemcinctus ENSDNOG00000049286 I 0.773
ENSFALG00000005113 Ficedula albicollis ENSFALG00000005113 I 0.773
Pvit_19093 Pogona vitticeps Pvit_19093 I 0.773
GLI3 Felis catus ENSFCAG00000011989 I 0.773
gli3.L Xenopus laevis XB-GENE-865509 I 0.773
GLI3 Canis familiaris ENSCAFG00000003535 I 0.773
ENSAMEG00000008405 Ailuropoda melanoleuca ENSAMEG00000008405 I 0.773
GLI3 Anolis carolinensis ENSACAG00000017547 I 0.773
XP_002933450 Xenopus tropicalis XP_002933450 I 0.773
ENSAPLG00000004361 Anas platyrhynchos ENSAPLG00000004361 I 0.773
XP_002933449 Xenopus tropicalis XP_002933449 I 0.773
GLI3 Bos taurus ENSBTAG00000010671 I 0.773
GLI3 Homo sapiens ENSG00000106571 D 0.773
GLI3 Equus caballus ENSECAG00000009281 I 0.773
Aan_R014715 Calypte anna Aan_R014715 I 0.773
GLI3 Gorilla gorilla ENSGGOG00000002026 I 0.773
GLI3 Loxodonta africana ENSLAFG00000008944 I 0.773
GLI3 Meleagris gallopavo ENSMGAG00000012277 I 0.773
GLI3 Macaca mulatta ENSMMUG00000013614 I 0.773
ENSMEUG00000013134 Macropus eugenii ENSMEUG00000013134 I 0.773
ENSGALG00000012329 Gallus gallus ENSGALG00000012329 I 0.773
Pvit_06470 Pogona vitticeps Pvit_06470 I 0.771
GLI2 Anolis carolinensis ENSACAG00000004133 I 0.771
gli2b Danio rerio ENSDARG00000020884 I 0.771
ENSAMXG00000006646 Astyanax mexicanus ENSAMXG00000006646 I 0.771
ENSAMXG00000003125 Astyanax mexicanus ENSAMXG00000003125 I 0.771
Ogr02489 Ophisaurus gracilis Ogr02489 I 0.771
gli2b Takifugu rubripes ENSTRUG00000010444 I 0.771
gli1 Danio rerio ENSDARG00000101244 I 0.769
ENSXMAG00000006443 Xiphophorus maculatus ENSXMAG00000006443 I 0.768
Aan_R003640 Calypte anna Aan_R003640 I 0.768
ENSAPLG00000015141 Anas platyrhynchos ENSAPLG00000015141 I 0.768
GLI2 Taeniopygia guttata ENSTGUG00000004599 I 0.768
GLI2 Meleagris gallopavo ENSMGAG00000011872 I 0.768
Afo_R006826 Aptenodytes forsteri Afo_R006826 I 0.768
Gfo_R001212 Geospiza fortis Gfo_R001212 I 0.768
Tal_R006208 Tyto alba Tal_R006208 I 0.768
ENSPFOG00000005116 Poecilia formosa ENSPFOG00000005116 I 0.768
ENSFALG00000013217 Ficedula albicollis ENSFALG00000013217 I 0.768
Cmyd_10009086 Chelonia mydas Cmyd_10009086 I 0.768
ENSPSIG00000008752 Pelodiscus sinensis ENSPSIG00000008752 I 0.768
Brh_R010932 Buceros rhinoceros Brh_R010932 I 0.768
GLI2 Gallus gallus ENSGALG00000011630 I 0.768
ENSMGAG00000003540 Meleagris gallopavo ENSMGAG00000003540 I 0.765
ENSGALG00000014639 Gallus gallus ENSGALG00000014639 I 0.765
GLI2 Otolemur garnettii ENSOGAG00000032438 I 0.764
ENSLOCG00000011983 Lepisosteus oculatus ENSLOCG00000011983 I 0.764
gli2b Tetraodon nigroviridis ENSTNIG00000017828 I 0.761
ENSMMUP00000002494 Macaca fascicularis ENSMMUP00000002494 I 0.759
Myotis_brandtii_Gli2_10019076 Myotis brandtii Myotis_brandtii_Gli2_10019076 I 0.759
ENSP00000390436-D1 Bos grunniens ENSP00000390436-D1 I 0.759
GLI2 Oryctolagus cuniculus ENSOCUG00000000638 I 0.759
GLI2 Felis catus ENSFCAG00000014531 I 0.759
GLI2 Dasypus novemcinctus ENSDNOG00000008730 I 0.759
GLI2 Homo sapiens ENSG00000074047 D 0.759
GLI2 Macaca mulatta ENSMMUG00000001868 I 0.759
GLI2 Monodelphis domestica ENSMODG00000000245 I 0.759
ENSCSAG00000016668 Chlorocebus sabaeus ENSCSAG00000016668 I 0.759
GLI2 Cavia porcellus ENSCPOG00000015189 I 0.759
ENSAMEG00000008708 Ailuropoda melanoleuca ENSAMEG00000008708 I 0.759
GLI2 Bos taurus ENSBTAG00000011682 I 0.759
GLI2 Canis familiaris ENSCAFG00000004821 I 0.759
ENSCJAG00000013342 Callithrix jacchus ENSCJAG00000013342 I 0.759
gli2b Tetraodon nigroviridis ENSTNIG00000010251 I 0.759
ENSMPUG00000000986 Mustela putorius furo ENSMPUG00000000986 I 0.759
Gli2 Mus musculus ENSMUSG00000048402 D 0.759
ENSPPYG00000012778 Pongo abelii ENSPPYG00000012778 I 0.759
GLI2 Pan troglodytes ENSPTRG00000012413 I 0.759
Gli2 Rattus norvegicus ENSRNOG00000007261 I 0.759
ENSSTOG00000004582 Ictidomys tridecemlineatus ENSSTOG00000004582 I 0.759
ENSPANG00000024168 Papio anubis ENSPANG00000024168 I 0.759
ENSNLEG00000000944 Nomascus leucogenys ENSNLEG00000000944 I 0.759
GLI2 Sus scrofa ENSSSCG00000015733 I 0.759
ENSOARG00000013052 Ovis aries ENSOARG00000013052 I 0.759
ENSSHAG00000004233 Sarcophilus harrisii ENSSHAG00000004233 I 0.759
GLI3 Echinops telfairi ENSETEG00000003955 I 0.758
GLI3 Microcebus murinus ENSMICG00000010785 I 0.758
GLI2 Procavia capensis ENSPCAG00000001704 I 0.756