CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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si:ch211-263k4.2
(
Gasterosteus aculeatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSGACG00000006600
T095606_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.772
0.921
PRDM16
M10224_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.772
0.921
PRDM16
M10225_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.772
0.921
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000008736
C2H2 ZF
88
109
YRCEDCDELFSSTLELRRHQKY
ENSGACP00000008736
C2H2 ZF
137
159
HECKDCEKIFPNEYSLGQHMIVH
ENSGACP00000008736
C2H2 ZF
165
187
YKCDQCPKAFNWKSNLIRHQMSH
ENSGACP00000008736
C2H2 ZF
193
216
FECENCDKVFTDPSNLQRHIRSQH
ENSGACP00000008736
C2H2 ZF
222
244
HTCPECGKTFATSSGLKQHKHIH
ENSGACP00000008736
C2H2 ZF
250
272
FICEVCHKSYTQFSNLCRHKRMH
ENSGACP00000008736
C2H2 ZF
279
300
IKCKDCGQLFSTTSSLNKHRRF
ENSGACP00000008736
C2H2 ZF
849
871
YSCRYCGKIFPRSANLTRHLRTH
ENSGACP00000008736
C2H2 ZF
877
900
YRCKYCDRSFSISSNLQRHVRNIH
ENSGACP00000008736
C2H2 ZF
906
928
FKCHLCNRCFGQQTNLDRHLKKH
Links
Other
C2H2 ZF
family TFs
Other
Gasterosteus aculeatus
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPFOG00000010341
Poecilia formosa
ENSPFOG00000010341
I
0.822
ENSXMAG00000019072
Xiphophorus maculatus
ENSXMAG00000019072
I
0.822
si:ch211-263k4.2
Oryzias latipes
ENSORLG00000004492
I
0.822
ENSONIG00000002121
Oreochromis niloticus
ENSONIG00000002121
I
0.818
ENSGMOG00000015664
Gadus morhua
ENSGMOG00000015664
I
0.816
PRDM16
Danio rerio
ENSDARG00000078324
I
0.810
ENSAMXG00000014024
Astyanax mexicanus
ENSAMXG00000014024
I
0.805
si:ch211-263k4.2
Takifugu rubripes
ENSTRUG00000014772
N
0.800
si:ch211-263k4.2
Tetraodon nigroviridis
ENSTNIG00000011975
N
0.800
ENSFALG00000009580
Ficedula albicollis
ENSFALG00000009580
I
0.796
Aan_R005955
Calypte anna
Aan_R005955
I
0.796
ENSLOCG00000005336
Lepisosteus oculatus
ENSLOCG00000005336
I
0.790
PRDM16
Sus scrofa
ENSSSCG00000021490
I
0.780
PRDM16
Otolemur garnettii
ENSOGAG00000005055
I
0.776
ENSPSIG00000004093
Pelodiscus sinensis
ENSPSIG00000004093
I
0.776
PRDM16
Equus caballus
ENSECAG00000017045
I
0.776
XP_002938538
Xenopus tropicalis
XP_002938538
I
0.775
ENSAPLG00000005898
Anas platyrhynchos
ENSAPLG00000005898
I
0.774
Alligator_sinensis_CCG011602.1
Alligator sinensis
Alligator_sinensis_CCG011602.1
I
0.774
Gfo_R009744
Geospiza fortis
Gfo_R009744
I
0.774
ENSP00000417899-D2
Bos grunniens
ENSP00000417899-D2
I
0.774
Brh_R007819
Buceros rhinoceros
Brh_R007819
I
0.774
Afo_R003306
Aptenodytes forsteri
Afo_R003306
I
0.774
PRDM16
Bos taurus
ENSBTAG00000018965
I
0.774
ENSGALG00000001063
Gallus gallus
ENSGALG00000001063
I
0.774
PRDM16
Meleagris gallopavo
ENSMGAG00000001857
I
0.774
PRDM16
Loxodonta africana
ENSLAFG00000001071
I
0.774
PRDM16
Homo sapiens
ENSG00000142611
D
0.772
PRDM16
Gorilla gorilla
ENSGGOG00000003763
I
0.772
ENSP00000270722
Macaca fascicularis
ENSP00000270722
I
0.772
PRDM16
Macaca mulatta
ENSMMUG00000009350
I
0.772
ENSPPYG00000001968
Pongo abelii
ENSPPYG00000001968
I
0.772
PRDM16
Canis familiaris
ENSCAFG00000019473
I
0.769