scrt2 (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000011802 T095692_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CG12605
M03691_2.00
Drosophila melanogaster
RHGCAACAGGTGN

NCACCTGTTGCDY
SELEX
Nitta et al.(2015)
CG12605_1
0.786 0.823
CG12605
M06139_2.00
Drosophila melanogaster
CACCTGTKG

CMACAGGTG
B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481
0.786 0.823
CG12605
M06140_2.00
Drosophila melanogaster
MCACCTGTKGVNN

NNBCMACAGGTGK
B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481
0.786 0.823
SCRT1
M02929_2.00
Homo sapiens
RHKCAACAGGTGKNH

DNMCACCTGTTGMDY
SELEX
Jolma et al.(2013)
SCRT1_1
0.785 0.885
SCRT1
M04655_2.00
Homo sapiens
NKCAACAGGTD

HACCTGTTGMN
SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX
0.785 0.885
SCRT1
M08397_2.00
Homo sapiens
RWKCAACAGGTG

CACCTGTTGMWY
ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE
0.785 0.885
SCRT1
M04656_2.00
Homo sapiens
NGCRACAGGTD

HACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX
0.785 0.885
SCRT2
M02925_2.00
Homo sapiens
RHGCAACAGGTGB

VCACCTGTTGCDY
SELEX
Jolma et al.(2013)
SCRT2_1
0.784 0.858
SCRT2
M04643_2.00
Homo sapiens
NGCAACAGGTD

HACCTGTTGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX
0.784 0.858
SCRT2
M04644_2.00
Homo sapiens
NGCRACAGGTG

CACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX
0.784 0.858
scrt
M03673_2.00
Drosophila melanogaster
RHGCAACAGGTGK

MCACCTGTTGCDY
SELEX
Nitta et al.(2015)
scrt_1
0.783 0.832
scrt
M06085_2.00
Drosophila melanogaster
MCCACCTGTTG

CAACAGGTGGK
B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880
0.783 0.832
scrt
M06086_2.00
Drosophila melanogaster
DNKCAACAGGTGK

MCACCTGTTGMNH
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880
0.783 0.832
scrt
M06087_2.00
Drosophila melanogaster
VMCACCTGTTGMN

NKCAACAGGTGKB
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880
0.783 0.832
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000015605 C2H2 ZF 163 185
ENSGACP00000015605 C2H2 ZF 195 216
ENSGACP00000015605 C2H2 ZF 220 242
ENSGACP00000015605 C2H2 ZF 248 270
ENSGACP00000015605 C2H2 ZF 276 297

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSGMOG00000019519 Gadus morhua ENSGMOG00000019519 I 0.825
ENSPFOG00000007738 Poecilia formosa ENSPFOG00000007738 I 0.816
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.816
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.816
scrt2 Takifugu rubripes ENSTRUG00000007620 I 0.816
scrt2 Tetraodon nigroviridis ENSTNIG00000012473 I 0.816
ENSAMXG00000018733 Astyanax mexicanus ENSAMXG00000018733 I 0.816
scrt2 Oryzias latipes ENSORLG00000015072 I 0.816
ENSAMXG00000018604 Astyanax mexicanus ENSAMXG00000018604 I 0.814
scrt2 Danio rerio ENSDARG00000056175 I 0.806
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.802
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.802
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.801
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.801
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.801
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.800
SCRT2 Gallus gallus ENSGALG00000028912 I 0.799
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.799
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.799
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.799
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.796
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.796
scrt1b Takifugu rubripes ENSTRUG00000011637 I 0.796
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.796
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.796
scrt1b Oryzias latipes ENSORLG00000008641 I 0.796
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.796
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.796
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.794
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.794
SMAR010760 Strigamia maritima SMAR010760 I 0.794
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.794
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.794
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.794
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.794
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.794
scrt1b Gasterosteus aculeatus ENSGACG00000008982 I 0.794
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.794
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.794
scrt1a Danio rerio ENSDARG00000100821 I 0.794
scrt1b Danio rerio ENSDARG00000040214 I 0.794
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.792
ISCW021315 Ixodes scapularis ISCW021315 I 0.792
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.790
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.790
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.790
GD13304 Drosophila simulans FBgn0185023 I 0.786
GD13305 Drosophila simulans FBgn0185024 I 0.786
GM14024 Drosophila sechellia FBgn0168953 I 0.786
GG14232 Drosophila erecta FBgn0106493 I 0.786
GK16692 Drosophila willistoni FBgn0218694 I 0.786
CG12605 Drosophila melanogaster FBgn0035481 D 0.786
GF24781 Drosophila ananassae FBgn0101774 I 0.786
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.786
GE20660 Drosophila yakuba FBgn0237965 I 0.786
Scrt1 Rattus norvegicus ENSRNOG00000025594 I 0.785
ENSOARG00000014008 Ovis aries ENSOARG00000014008 I 0.785
SCRT1 Otolemur garnettii ENSOGAG00000026538 I 0.785
ENSPANG00000017232 Papio anubis ENSPANG00000017232 I 0.785
SCRT1 Dasypus novemcinctus ENSDNOG00000043826 I 0.785
ENSCPOG00000024058 Cavia porcellus ENSCPOG00000024058 I 0.785
ENSCSAG00000008549 Chlorocebus sabaeus ENSCSAG00000008549 I 0.785
SCRT1 Callithrix jacchus ENSCJAG00000021406 I 0.785
SCRT1 Bos taurus ENSBTAG00000046208 I 0.785
ENSAMEG00000005557 Ailuropoda melanoleuca ENSAMEG00000005557 I 0.785
Scrt1 Mus musculus ENSMUSG00000048385 I 0.785
SCRT1 Homo sapiens ENSG00000261678 D 0.785
SCRT1 Sus scrofa ENSSSCG00000025879 I 0.785
SCRT1 Gorilla gorilla ENSGGOG00000013612 I 0.785
SCRT1 Loxodonta africana ENSLAFG00000031587 I 0.785
ENSSTOG00000023184 Ictidomys tridecemlineatus ENSSTOG00000023184 I 0.785
SCRT2 Tursiops truncatus ENSTTRG00000007039 I 0.784
Scrt2 Rattus norvegicus ENSRNOG00000005148 I 0.784
SCRT2 Loxodonta africana ENSLAFG00000030340 I 0.784
SCRT2 Otolemur garnettii ENSOGAG00000031187 I 0.784
SCRT2 Cavia porcellus ENSCPOG00000008447 I 0.784
ENSCSAG00000010473 Chlorocebus sabaeus ENSCSAG00000010473 I 0.784
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.784
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.784
MDOA001622 Musca domestica MDOA001622 I 0.784
LCUP005777 Lucilia cuprina LCUP005777 I 0.784
SCRT2 Dasypus novemcinctus ENSDNOG00000002583 I 0.784
SCRT2 Callithrix jacchus ENSCJAG00000020870 I 0.784
SCRT1 Macaca mulatta ENSMMUG00000028886 I 0.784
Scrt2 Mus musculus ENSMUSG00000060257 I 0.784
ENSNLEG00000009420 Nomascus leucogenys ENSNLEG00000009420 I 0.784
SCRT2 Felis catus ENSFCAG00000010922 I 0.784
ENSMMUG00000017354 Macaca mulatta ENSMMUG00000017354 I 0.784
SCRT2 Homo sapiens ENSG00000215397 D 0.784
ENSGGOG00000015228 Gorilla gorilla ENSGGOG00000015228 I 0.784
LCUP005780 Lucilia cuprina LCUP005780 I 0.783
GM14603 Drosophila sechellia FBgn0169524 I 0.783
MDOA005810 Musca domestica MDOA005810 I 0.783
GD13794 Drosophila simulans FBgn0185494 I 0.783
GJ16103 Drosophila virilis FBgn0203288 I 0.783
GK17507 Drosophila willistoni FBgn0219506 I 0.783
MESCA005876 Megaselia scalaris MESCA005876 I 0.783
GM11368 Drosophila sechellia FBgn0166311 I 0.783
GE21392 Drosophila yakuba FBgn0238652 I 0.783
GH15771 Drosophila grimshawi FBgn0123242 I 0.783
GG15174 Drosophila erecta FBgn0107427 I 0.783
scrt Drosophila melanogaster FBgn0004880 D 0.783
GI12551 Drosophila mojavensis FBgn0135308 I 0.783
GF25020 Drosophila ananassae FBgn0102012 I 0.783
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.782
PHUM474180 Pediculus humanus PHUM474180 I 0.781
AMEC013076 Anopheles melas AMEC013076 I 0.781
CLEC001353 Cimex lectularius CLEC001353 I 0.781
AMEM013788 Anopheles merus AMEM013788 I 0.781
AFUN002786 Anopheles funestus AFUN002786 I 0.781
AGAP006791 Anopheles gambiae AGAP006791 I 0.781
AATE020159 Anopheles atroparvus AATE020159 I 0.781
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.781
ACUA022497 Anopheles culicifacies ACUA022497 I 0.781
AFAF007486 Anopheles farauti AFAF007486 I 0.781
ACOM031685 Anopheles coluzzii ACOM031685 I 0.781
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.781
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.781
AAEL005176 Aedes aegypti AAEL005176 I 0.781
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.781
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.781
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.781
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.781
L798_11766 Zootermopsis nevadensis L798_11766 I 0.781
ACHR010032 Anopheles christyi ACHR010032 I 0.781
ASIS022059 Anopheles sinensis ASIS022059 I 0.781
AAEL009230 Aedes aegypti AAEL009230 I 0.779
AATE010651 Anopheles atroparvus AATE010651 I 0.779
AMEC015586 Anopheles melas AMEC015586 I 0.779
AMEM017035 Anopheles merus AMEM017035 I 0.779
ASIS012063 Anopheles sinensis ASIS012063 I 0.779
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.779
AAEL014359 Aedes aegypti AAEL014359 I 0.779
AFUN001835 Anopheles funestus AFUN001835 I 0.779
ACUA020861 Anopheles culicifacies ACUA020861 I 0.779
AFAF017001 Anopheles farauti AFAF017001 I 0.779
ACOM031677 Anopheles coluzzii ACOM031677 I 0.779
ACUA003488 Anopheles culicifacies ACUA003488 I 0.779
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.779
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.779
AGAP006794 Anopheles gambiae AGAP006794 I 0.779
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.778
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.777
estExt_fgenesh2_pm.C_2290002 Branchiostoma floridae estExt_fgenesh2_pm.C_2290002 I 0.777
D915_06717 Fasciola hepatica D915_06717 I 0.775
ECPE_0000958201 Echinostoma caproni ECPE_0000958201 I 0.775
GJ16104 Drosophila virilis FBgn0203289 I 0.774
GI12763 Drosophila mojavensis FBgn0135520 I 0.774
Sjc_0100840 Schistosoma japonicum Sjc_0100840 I 0.773
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.773
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.773
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.773
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.773
A_07725 Schistosoma haematobium A_07725 I 0.773
PHUM474050 Pediculus humanus PHUM474050 I 0.773
TriadG20314 Trichoplax adhaerens TriadG20314 I 0.773
Smp_054430 Schistosoma mansoni Smp_054430 I 0.773
CapteG223614 Capitella teleta CapteG223614 I 0.772
NEMVEDRAFT_v1g108258 Nematostella vectensis NEMVEDRAFT_v1g108258 I 0.771
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.770
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.770
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.769
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.769
MCINX009925 Melitaea cinxia MCINX009925 I 0.769
KGM_21493 Danaus plexippus KGM_21493 I 0.769
ACYPI004643 Acyrthosiphon pisum ACYPI004643 I 0.769
HMEL014701 Heliconius melpomene HMEL014701 I 0.769
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.768
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.768
CapteG176021 Capitella teleta CapteG176021 I 0.767
CapteG76620 Capitella teleta CapteG76620 I 0.767
L898_g5709 Steinernema monticolum L898_g5709 I 0.765
CapteG149623 Capitella teleta CapteG149623 I 0.765
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.765
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.765
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.763
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.763
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.763
T265_09545 Opisthorchis viverrini T265_09545 I 0.763
csin111588 Clonorchis sinensis csin111588 I 0.763
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.763
L889_g21793 Steinernema feltiae L889_g21793 I 0.763
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.761
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.761
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.761
D918_03987 Trichuris suis D918_03987 I 0.761
L893_g27175 Steinernema glaseri L893_g27175 I 0.761
L892_g9690 Steinernema scapterisci L892_g9690 I 0.761
BGIBMGA000604 Bombyx mori BGIBMGA000604 I 0.759
PXEA_0002510801 Protopolystoma xenopodis PXEA_0002510801 I 0.756
LotgiG58520 Lottia gigantea LotgiG58520 I 0.756
D917_06340 Trichinella nativa D917_06340 I 0.755
EFV52761 Trichinella spiralis EFV52761 I 0.755