gfi1aa (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000015674 T095737_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.807 0.942
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.807 0.942
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.807 0.942
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.807 0.942
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.807 0.942
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.807 0.942
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.807 0.942
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.807 0.942
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.805 0.935
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.775 0.870
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN

NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.775 0.870
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY

RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.775 0.870
GFI1B
M10243_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.775 0.870
GFI1B
M10244_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.775 0.870
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN

NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.775 0.870
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.773 0.862
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.773 0.862
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.773 0.862
GFI1
M00237_2.00
Homo sapiens
ATATCAVD

HBTGATAT
PBM
Barrera et al.(2016)
GFI1_N382S
0.771 0.935
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.765 0.862
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.765 0.833
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000020685 C2H2 ZF 230 253
ENSGACP00000020685 C2H2 ZF 259 281
ENSGACP00000020685 C2H2 ZF 287 309
ENSGACP00000020685 C2H2 ZF 315 337
ENSGACP00000020685 C2H2 ZF 343 365
ENSGACP00000020685 C2H2 ZF 371 394
ENSGACP00000020686 C2H2 ZF 162 185
ENSGACP00000020686 C2H2 ZF 191 213
ENSGACP00000020686 C2H2 ZF 219 241
ENSGACP00000020686 C2H2 ZF 247 269
ENSGACP00000020686 C2H2 ZF 275 297
ENSGACP00000020686 C2H2 ZF 303 326

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R000889 Calypte anna Aan_R000889 I 0.806
Aan_R008865 Calypte anna Aan_R008865 I 0.776
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.776
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.806
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.806
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.806
CapteG45287 Capitella teleta CapteG45287 I 0.768
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.767
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.757
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.804
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.779
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.806
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.807
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.800
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.776
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.806
GFI1B Bos taurus ENSBTAG00000012772 I 0.764
GFI1 Bos taurus ENSBTAG00000016723 I 0.809
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.764
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.796
GFI1B Canis familiaris ENSCAFG00000019877 I 0.774
GFI1 Canis familiaris ENSCAFG00000020155 I 0.807
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.807
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.775
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.804
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.774
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.773
gfi1aa Danio rerio ENSDARG00000020746 I 0.817
gfi1ab Danio rerio ENSDARG00000044457 I 0.809
gfi1b Danio rerio ENSDARG00000079947 I 0.792
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.807
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.774
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.773
GFI1 Equus caballus ENSECAG00000006647 I 0.809
GFI1B Equus caballus ENSECAG00000008127 I 0.773
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.807
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.776
GFI1 Felis catus ENSFCAG00000005914 I 0.807
GFI1B Felis catus ENSFCAG00000027147 I 0.776
GFI1 Homo sapiens ENSG00000162676 D 0.807
GFI1B Homo sapiens ENSG00000165702 D 0.775
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.792
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.786
GFI1B Gallus gallus ENSGALG00000003478 I 0.776
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.806
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.807
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.775
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.806
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.799
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.782
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.778
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.809
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.807
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.769
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.806
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.784
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.776
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.806
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.759
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.809
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.807
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.763
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.807
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.775
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.807
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.774
Gfi1b Mus musculus ENSMUSG00000026815 D 0.773
Gfi1 Mus musculus ENSMUSG00000029275 D 0.807
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.807
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.775
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.770
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.775
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.776
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.807
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.819
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.776
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.808
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.807
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.819
gfi1b Oryzias latipes ENSORLG00000014390 I 0.774
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.773
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.794
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.807
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.773
GFI1B Procavia capensis ENSPCAG00000012329 I 0.775
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.776
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.819
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.808
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.775
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.802
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.776
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.775
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.809
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.807
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.775
GFI1B Sus scrofa ENSSSCG00000005737 I 0.776
GFI1 Sus scrofa ENSSSCG00000006902 I 0.809
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.807
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.776
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.806
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.798
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.774
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.800
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.774
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.815
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.809
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.819
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.774
sens-2 Drosophila melanogaster FBgn0051632 D 0.765
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.765
GF15430 Drosophila ananassae FBgn0092455 I 0.765
GG10437 Drosophila erecta FBgn0102746 I 0.765
GH13715 Drosophila grimshawi FBgn0121191 I 0.765
GI23984 Drosophila mojavensis FBgn0146708 I 0.765
GL26188 Drosophila persimilis FBgn0163770 I 0.765
GM16223 Drosophila sechellia FBgn0171139 I 0.765
GJ21268 Drosophila virilis FBgn0208401 I 0.765
GK24242 Drosophila willistoni FBgn0226203 I 0.765
GE14143 Drosophila yakuba FBgn0231766 I 0.765
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.776
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.806
LotgiG129344 Lottia gigantea LotgiG129344 I 0.771
LotgiG83709 Lottia gigantea LotgiG83709 I 0.759
MDOA011065 Musca domestica MDOA011065 I 0.765
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.756
NEMVEDRAFT_v1g182742 Nematostella vectensis NEMVEDRAFT_v1g182742 I 0.761
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.806
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.803
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.757
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.761
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.780
Tal_R001363 Tyto alba Tal_R001363 I 0.778
Tal_R006464 Tyto alba Tal_R006464 I 0.806
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.764
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.768
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.768
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.806