CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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snai2
(
Gasterosteus aculeatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSGACG00000017935
T095774_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SNAI2
M00221_2.00
Homo sapiens
HACYTGH
DCARGTD
PBM
Barrera et al.(2016)
SNAI2_REF
0.803
0.939
SNAI2
M02873_2.00
Homo sapiens
VCACCTGYN
NRCAGGTGB
SELEX
Jolma et al.(2013)
SNAI2_1
0.803
0.939
SNAI2
M04392_2.00
Homo sapiens
YGCACCTGYY
RRCAGGTGCR
SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX
0.803
0.939
SNAI2
M04394_2.00
Homo sapiens
YRCACCTGYY
RRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX
0.803
0.939
SNAI2
M08853_2.00
Homo sapiens
NVCACCTGYY
RRCAGGTGBN
Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A
0.803
0.939
Snai2
M08973_2.00
Mus musculus
VNRCACCTGYY
RRCAGGTGYNB
Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A
0.803
0.939
SNAI2
M10102_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6_01
0.803
0.939
SNAI2
M10103_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6_02
0.803
0.939
SNAI2
M10104_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6
0.803
0.939
SNAI2
M00220_2.00
Homo sapiens
NHACCTGY
RCAGGTDN
PBM
Barrera et al.(2016)
SNAI2_D119E
0.803
0.939
SNAI2
M04393_2.00
Homo sapiens
YRCACCTGYN
NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX
0.803
0.939
SNAI2
M04395_2.00
Homo sapiens
YRCACCTGYN
NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX
0.803
0.939
SNAI2
M00222_2.00
Homo sapiens
HACYTGHNNN
NNNDCARGTD
PBM
Barrera et al.(2016)
SNAI2_T234I
0.799
0.930
wor
M03664_2.00
Drosophila melanogaster
GYRACAGGTGYAH
DTRCACCTGTYRC
SELEX
Nitta et al.(2015)
wor_1
0.759
0.798
wor
M03665_2.00
Drosophila melanogaster
DTRCACCTGTYGY
RCRACAGGTGYAH
SELEX
Nitta et al.(2015)
wor_2
0.759
0.798
wor
M06051_2.00
Drosophila melanogaster
CACCTGY
RCAGGTG
B1H
Zhu et al.(2011)
wor_SANGER_2.5_FBgn0001983
0.759
0.798
wor
M06052_2.00
Drosophila melanogaster
VCACCTGY
RCAGGTGB
B1H
Zhu et al.(2011)
wor_SOLEXA_2.5_FBgn0001983
0.759
0.798
esg
M06050_2.00
Drosophila melanogaster
CACCTGH
DCAGGTG
B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981
0.757
0.816
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000023693
C2H2 ZF
121
143
FQCGLCSKSYSTYSGLLKHKQLH
ENSGACP00000023693
C2H2 ZF
152
174
FSCKYCEKEYVSLGALKMHIRTH
ENSGACP00000023693
C2H2 ZF
178
200
CVCKICGKAFSRPWLLQGHIRTH
ENSGACP00000023693
C2H2 ZF
207
229
FSCPHCNRAFADRSNLRAHLQTH
ENSGACP00000023693
C2H2 ZF
235
256
YQCKSCSKTFSRMSLLHKHEES
Links
Other
C2H2 ZF
family TFs
Other
Gasterosteus aculeatus
TFs
105 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSGMOG00000002669
Gadus morhua
ENSGMOG00000002669
I
0.825
snai2
Tetraodon nigroviridis
ENSTNIG00000008504
I
0.823
ENSLOCG00000005992
Lepisosteus oculatus
ENSLOCG00000005992
I
0.823
ENSONIG00000009542
Oreochromis niloticus
ENSONIG00000009542
I
0.823
snai2
Takifugu rubripes
ENSTRUG00000006860
I
0.823
snai2
Oryzias latipes
ENSORLG00000017475
I
0.823
ENSPFOG00000014336
Poecilia formosa
ENSPFOG00000014336
I
0.822
ENSXMAG00000019030
Xiphophorus maculatus
ENSXMAG00000019030
I
0.822
snai2
Danio rerio
ENSDARG00000040046
I
0.814
ENSGALG00000015241
Gallus gallus
ENSGALG00000015241
I
0.805
ENSSSCG00000026570
Sus scrofa
ENSSSCG00000026570
I
0.803
SNAI2
Taeniopygia guttata
ENSTGUG00000010914
I
0.803
ENSSHAG00000004205
Sarcophilus harrisii
ENSSHAG00000004205
I
0.803
ENSPPYG00000018578
Pongo abelii
ENSPPYG00000018578
I
0.803
SNAI2
Procavia capensis
ENSPCAG00000001788
I
0.803
ENSPANG00000017540
Papio anubis
ENSPANG00000017540
I
0.803
ENSPSIG00000016395
Pelodiscus sinensis
ENSPSIG00000016395
I
0.803
SNAI2
Pan troglodytes
ENSPTRG00000020235
I
0.803
Snai2
Rattus norvegicus
ENSRNOG00000047699
I
0.803
SNAI2
Pteropus vampyrus
ENSPVAG00000009457
I
0.803
ENSSSCG00000024404
Sus scrofa
ENSSSCG00000024404
I
0.803
Afo_R005870
Aptenodytes forsteri
Afo_R005870
I
0.803
AAK54137
Xenopus laevis
AAK54137
I
0.803
AAK54135
Xenopus tropicalis
AAK54135
I
0.803
AAB34088
Xenopus laevis
AAB34088
I
0.803
AAK54139
Xenopus laevis
AAK54139
I
0.803
snai2
Xenopus tropicalis
XB-GENE-487371
I
0.803
snai2.S
Xenopus laevis
XB-GENE-865699
I
0.803
snai2.L
Xenopus laevis
XB-GENE-6255814
I
0.803
Tal_R003673
Tyto alba
Tal_R003673
I
0.803
Pvit_15376
Pogona vitticeps
Pvit_15376
I
0.803
ENSP00000020945-D1
Bos grunniens
ENSP00000020945-D1
I
0.803
Brh_R006038
Buceros rhinoceros
Brh_R006038
I
0.803
Alligator_sinensis_CCG016283.1
Alligator sinensis
Alligator_sinensis_CCG016283.1
I
0.803
ENSP00000380034
Macaca fascicularis
ENSP00000380034
I
0.803
Gfo_R012649
Geospiza fortis
Gfo_R012649
I
0.803
Ogr04681
Ophisaurus gracilis
Ogr04681
I
0.803
Myotis_brandtii_Snai2_10018131
Myotis brandtii
Myotis_brandtii_Snai2_10018131
I
0.803
Aan_R012932
Calypte anna
Aan_R012932
I
0.803
ENSSTOG00000028743
Ictidomys tridecemlineatus
ENSSTOG00000028743
I
0.803
SNAI2
Callithrix jacchus
ENSCJAG00000013499
I
0.803
ENSCPOG00000014827
Cavia porcellus
ENSCPOG00000014827
I
0.803
SNAI2
Choloepus hoffmanni
ENSCHOG00000007046
I
0.803
SNAI2
Canis familiaris
ENSCAFG00000006638
I
0.803
ENSAMEG00000009606
Ailuropoda melanoleuca
ENSAMEG00000009606
I
0.803
ENSAPLG00000003920
Anas platyrhynchos
ENSAPLG00000003920
I
0.803
ENSCSAG00000014787
Chlorocebus sabaeus
ENSCSAG00000014787
I
0.803
SNAI2
Dasypus novemcinctus
ENSDNOG00000035997
I
0.803
SNAI2
Homo sapiens
ENSG00000019549
D
0.803
SNAI2
Gorilla gorilla
ENSGGOG00000000959
I
0.803
SNAI2
Felis catus
ENSFCAG00000015779
I
0.803
SNAI2
Otolemur garnettii
ENSOGAG00000010500
I
0.803
SNAI2
Equus caballus
ENSECAG00000010120
I
0.803
ENSFALG00000005762
Ficedula albicollis
ENSFALG00000005762
I
0.803
ENSLACG00000005413
Latimeria chalumnae
ENSLACG00000005413
I
0.803
SNAI2
Bos taurus
ENSBTAG00000013227
I
0.803
ENSMPUG00000010793
Mustela putorius furo
ENSMPUG00000010793
I
0.803
SNAI2
Loxodonta africana
ENSLAFG00000009299
I
0.803
SNAI2
Macaca mulatta
ENSMMUG00000016195
I
0.803
Snai2
Mus musculus
ENSMUSG00000022676
D
0.803
ENSNLEG00000013421
Nomascus leucogenys
ENSNLEG00000013421
I
0.803
SNAI2
Oryctolagus cuniculus
ENSOCUG00000012254
I
0.803
ENSOARG00000013030
Ovis aries
ENSOARG00000013030
I
0.803
SNAI2
Ornithorhynchus anatinus
ENSOANG00000007267
I
0.803
SNAI2
Myotis lucifugus
ENSMLUG00000001086
I
0.803
SNAI2
Monodelphis domestica
ENSMODG00000010173
I
0.803
SNAI2
Meleagris gallopavo
ENSMGAG00000010813
I
0.803
SNAI2
Microcebus murinus
ENSMICG00000000335
I
0.803
SNAI2
Anolis carolinensis
ENSACAG00000012332
I
0.803
ENSMEUG00000009510
Macropus eugenii
ENSMEUG00000009510
I
0.799
HMEL002306
Heliconius melpomene
HMEL002306
I
0.772
MCINX001355
Melitaea cinxia
MCINX001355
I
0.769
L798_10614
Zootermopsis nevadensis
L798_10614
I
0.769
KGM_17970
Danaus plexippus
KGM_17970
I
0.769
ENSAMXG00000011013
Astyanax mexicanus
ENSAMXG00000011013
I
0.765
BGIBMGA006230
Bombyx mori
BGIBMGA006230
I
0.765
PHUM091060
Pediculus humanus
PHUM091060
I
0.763
GI22651
Drosophila mojavensis
FBgn0145379
I
0.762
GJ23203
Drosophila virilis
FBgn0210305
I
0.762
NV17743
Nasonia vitripennis
NV17743
I
0.761
ENSLACG00000004705
Latimeria chalumnae
ENSLACG00000004705
I
0.760
estExt_fgenesh2_kg.C_190001
Branchiostoma floridae
estExt_fgenesh2_kg.C_190001
I
0.759
GK18253
Drosophila willistoni
FBgn0220252
I
0.759
GF14525
Drosophila ananassae
FBgn0091552
I
0.759
GG24207
Drosophila erecta
FBgn0116339
I
0.759
wor
Drosophila melanogaster
FBgn0001983
D
0.759
GM14357
Drosophila sechellia
FBgn0169282
I
0.759
GE19402
Drosophila yakuba
FBgn0236745
I
0.759
GD21956
Drosophila simulans
FBgn0193371
I
0.759
ENSLOCG00000004887
Lepisosteus oculatus
ENSLOCG00000004887
I
0.758
GH13119
Drosophila grimshawi
FBgn0120596
I
0.758
CLEC007039
Cimex lectularius
CLEC007039
I
0.757
LCUP013268
Lucilia cuprina
LCUP013268
I
0.757
esg
Drosophila melanogaster
FBgn0001981
D
0.757
MDOA014024
Musca domestica
MDOA014024
I
0.757
LDEC001157
Leptinotarsa decemlineata
LDEC001157
I
0.757
GF15382
Drosophila ananassae
FBgn0092407
I
0.757
GL26425
Drosophila persimilis
FBgn0164007
I
0.757
GE20968
Drosophila yakuba
FBgn0238253
I
0.757
GA17666
Drosophila pseudoobscura
FBgn0077676
I
0.757
GG25158
Drosophila erecta
FBgn0117283
I
0.757
RPRC005707
Rhodnius prolixus
RPRC005707
I
0.757
GA17994
Drosophila pseudoobscura
FBgn0078003
I
0.756
GL26594
Drosophila persimilis
FBgn0164176
I
0.756
CapteG76255
Capitella teleta
CapteG76255
I
0.756