CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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bcl11ab
(
Gasterosteus aculeatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSGACG00000019222
T095788_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.817
0.947
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.817
0.947
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.817
0.947
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.814
0.930
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.814
0.930
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000025409
C2H2 ZF
412
433
SCEFCGKTFKFQSNLIVHRRSH
ENSGACP00000025409
C2H2 ZF
439
461
FKCHLCNHACTQASKLKRHMKTH
ENSGACP00000025409
C2H2 ZF
716
738
DTCEYCGKVFKNCSNLTVHRRSH
ENSGACP00000025409
C2H2 ZF
744
766
YKCELCSYACAQSSKLTRHMKTH
ENSGACP00000025409
C2H2 ZF
774
797
YKCEICHMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Gasterosteus aculeatus
TFs
125 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy