CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PATZ1
(
Gallus gallus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSGALG00000006934
T095875_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PATZ1
M08287_2.00
Homo sapiens
CCCCDCCC
GGGHGGGG
ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME
0.824
0.985
PATZ1
M08864_2.00
Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY
RKGGVRGRGRMKGVRVNDGVRN
Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C
0.824
0.985
PATZ1
M10137_2.00
Homo sapiens
NDDCCCCCCCCSH
DSGGGGGGGGHHN
Transfac
Matys et al.(2006)
V$MAZR_01
0.824
0.985
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000011217
C2H2 ZF
295
317
LPCGLCGKVFTDANRLRQHEAQH
ENSGALP00000011217
C2H2 ZF
359
380
ACDICGKIFRDVYHLNRHKLSH
ENSGALP00000011217
C2H2 ZF
386
408
YSCPVCGLRFKRKDRMSYHVRSH
ENSGALP00000011217
C2H2 ZF
416
439
YICQSCGKGFSRPDHLNGHIKQVH
ENSGALP00000011217
C2H2 ZF
445
467
HKCQTCNASFATRDRLRSHLACH
ENSGALP00000011217
C2H2 ZF
499
521
FCTICNRGFSSASYLKVHVKTHH
Links
Other
C2H2 ZF
family TFs
Other
Gallus gallus
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy