CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLACG00000013316
(
Latimeria chalumnae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSLACG00000013316
T097106_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FEZF1
M08307_2.00
Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN
ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE
0.814
0.957
FEZF1
M08889_2.00
Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH
Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C
0.814
0.957
erm
M03686_2.00
Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA
SELEX
Nitta et al.(2015)
CG31670_1
0.794
0.899
erm
M06128_2.00
Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM
B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375
0.794
0.899
erm
M06129_2.00
Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV
B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375
0.794
0.899
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLACP00000015129
C2H2 ZF
262
284
FTCEVCGKVFNAHYNLTRHMPVH
ENSLACP00000015129
C2H2 ZF
290
312
FVCKVCGKGFRQASTLCRHKIIH
ENSLACP00000015129
C2H2 ZF
318
340
HKCNQCGKAFNRSSTLNTHIRIH
ENSLACP00000015129
C2H2 ZF
346
368
FVCEFCGKGFHQKGNYKNHKLTH
ENSLACP00000015129
C2H2 ZF
374
396
YKCTICNKAFHQIYNLTFHMHTH
ENSLACP00000015129
C2H2 ZF
402
425
FTCGTCGKGFCRNFDLKKHIRKLH
Links
Other
C2H2 ZF
family TFs
Other
Latimeria chalumnae
TFs
167 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy