CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM16
(
Loxodonta africana
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSLAFG00000001071
T097207_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.825
0.996
PRDM16
M10224_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.825
0.996
PRDM16
M10225_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.825
0.996
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000000902
C2H2 ZF
219
240
FRCDECDELFQSKLDLRRHKKY
ENSLAFP00000000902
C2H2 ZF
275
297
HECKDCERMFPNKYSLEQHMIIH
ENSLAFP00000000902
C2H2 ZF
303
325
YKCDQCPKAFNWKSNLIRHQMSH
ENSLAFP00000000902
C2H2 ZF
331
354
FECENCVKVFTDPSNLQRHIRSQH
ENSLAFP00000000902
C2H2 ZF
360
382
HACPDCGKTFATSSGLKQHKHIH
ENSLAFP00000000902
C2H2 ZF
388
410
FICEVCHKSYTQFSNLCRHKRMH
ENSLAFP00000000902
C2H2 ZF
417
438
IKCKDCGQMFSTTSSLNKHRRF
ENSLAFP00000000902
C2H2 ZF
945
967
YTCRYCGKIFPRSANLTRHLRTH
ENSLAFP00000000902
C2H2 ZF
973
996
YRCKYCDRSFSISSNLQRHVRNIH
ENSLAFP00000000902
C2H2 ZF
1002
1024
FKCHLCNRCFGQQTNLDRHLKKH
ENSLAFP00000017156
C2H2 ZF
85
106
FRCDECDELFQSKLDLRRHKKY
ENSLAFP00000017156
C2H2 ZF
141
163
HECKDCERMFPNKYSLEQHMIIH
ENSLAFP00000017156
C2H2 ZF
169
191
YKCDQCPKAFNWKSNLIRHQMSH
ENSLAFP00000017156
C2H2 ZF
197
220
FECENCVKVFTDPSNLQRHIRSQH
ENSLAFP00000017156
C2H2 ZF
226
248
HACPDCGKTFATSSGLKQHKHIH
ENSLAFP00000017156
C2H2 ZF
254
276
FICEVCHKSYTQFSNLCRHKRMH
ENSLAFP00000017156
C2H2 ZF
283
304
IKCKDCGQMFSTTSSLNKHRRF
ENSLAFP00000017156
C2H2 ZF
811
833
YTCRYCGKIFPRSANLTRHLRTH
ENSLAFP00000017156
C2H2 ZF
839
862
YRCKYCDRSFSISSNLQRHVRNIH
ENSLAFP00000017156
C2H2 ZF
868
890
FKCHLCNRCFGQQTNLDRHLKKH
Links
Other
C2H2 ZF
family TFs
Other
Loxodonta africana
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy