CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZIC4
(
Loxodonta africana
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSLAFG00000010922
T097338_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZIC4
M02912_2.00
Homo sapiens
KRCCCCCYGYDGNGH
DCNCHRCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC4_1
0.781
0.991
ZIC4
M04566_2.00
Homo sapiens
BVCMHCMYRYNRYGH
DCRYNRYRKGDKGBV
SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX
0.779
0.982
ZIC4
M04567_2.00
Homo sapiens
BRCCHCCYRYBGTKH
DMACVRYRGGDGGYV
SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX
0.779
0.982
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000009135
C2H2 ZF
141
162
PRLCSKTFSTMQELVTHVTVEH
ENSLAFP00000009135
C2H2 ZF
171
198
HICFWEECPRQGKPFKAKYKLVNHIRVH
ENSLAFP00000009135
C2H2 ZF
204
228
FPCPFPGCGKVFARSENLKIHKRTH
ENSLAFP00000009135
C2H2 ZF
234
258
FRCEFEGCERRFANSSDRKKHSHVH
ENSLAFP00000009135
C2H2 ZF
264
288
YTCKVRGCDKCYTHPSSLRKHMKVH
ENSLAFP00000027544
C2H2 ZF
24
44
RLCSKTFSTMQELVTHVTVEH
ENSLAFP00000027544
C2H2 ZF
53
80
HICFWEECPRQGKPFKAKYKLVNHIRVH
ENSLAFP00000027544
C2H2 ZF
86
110
FPCPFPGCGKVFARSENLKIHKRTH
ENSLAFP00000027544
C2H2 ZF
116
140
FRCEFEGCERRFANSSDRKKHSHVH
ENSLAFP00000027544
C2H2 ZF
146
170
YTCKVRGCDKCYTHPSSLRKHMKVH
Links
Other
C2H2 ZF
family TFs
Other
Loxodonta africana
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy