GFI1B (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000022367 T097443_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.813 0.971
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.813 0.971
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.813 0.971
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.811 0.964
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN

NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.811 0.964
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY

RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.811 0.964
GFI1B
M10243_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.811 0.964
GFI1B
M10244_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.811 0.964
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN

NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.811 0.964
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.801 0.957
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.777 0.870
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.777 0.870
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.777 0.870
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.777 0.870
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.777 0.870
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.777 0.870
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.777 0.870
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.777 0.870
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.775 0.862
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.770 0.819
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000017939 C2H2 ZF 163 186
ENSLAFP00000017939 C2H2 ZF 192 214
ENSLAFP00000017939 C2H2 ZF 220 242
ENSLAFP00000017939 C2H2 ZF 248 270
ENSLAFP00000017939 C2H2 ZF 276 298
ENSLAFP00000017939 C2H2 ZF 304 327
ENSLAFP00000024362 C2H2 ZF 163 186
ENSLAFP00000024362 C2H2 ZF 192 214
ENSLAFP00000024362 C2H2 ZF 221 243
ENSLAFP00000024362 C2H2 ZF 249 271
ENSLAFP00000024362 C2H2 ZF 304 327

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.821
GFI1B Procavia capensis ENSPCAG00000012329 I 0.820
GFI1B Equus caballus ENSECAG00000008127 I 0.814
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.813
GFI1B Canis familiaris ENSCAFG00000019877 I 0.813
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.813
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.813
Gfi1b Mus musculus ENSMUSG00000026815 D 0.813
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.813
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.813
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.811
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.811
GFI1B Felis catus ENSFCAG00000027147 I 0.811
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.811
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.811
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.811
GFI1B Homo sapiens ENSG00000165702 D 0.811
GFI1B Sus scrofa ENSSSCG00000005737 I 0.811
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.811
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.811
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.810
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.809
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.808
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.807
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.807
Aan_R008865 Calypte anna Aan_R008865 I 0.806
GFI1B Gallus gallus ENSGALG00000003478 I 0.806
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.806
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.806
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.806
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.806
Tal_R001363 Tyto alba Tal_R001363 I 0.806
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.806
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.805
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.804
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.803
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.803
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.801
GFI1B Bos taurus ENSBTAG00000012772 I 0.801
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.799
ENSAMEG00000004257 Ailuropoda melanoleuca ENSAMEG00000004257 N 0.798
ENSOARG00000005567 Ovis aries ENSOARG00000005567 N 0.798
ENSSHAG00000006462 Sarcophilus harrisii ENSSHAG00000006462 N 0.797
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.796
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.794
gfi1b Danio rerio ENSDARG00000079947 I 0.792
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.792
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.790
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.783
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.783
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.782
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.782
gfi1b Oryzias latipes ENSORLG00000014390 I 0.782
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.781
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.781
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.780
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.779
Tal_R006464 Tyto alba Tal_R006464 I 0.779
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.779
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.779
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.779
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.779
gfi1ab Danio rerio ENSDARG00000044457 I 0.779
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.779
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.779
Aan_R000889 Calypte anna Aan_R000889 I 0.779
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.779
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.779
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.779
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.779
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.779
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.779
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.779
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.779
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.777
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.777
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.777
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.777
GFI1 Sus scrofa ENSSSCG00000006902 I 0.777
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.777
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.777
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.777
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.777
GFI1 Felis catus ENSFCAG00000005914 I 0.777
GFI1 Equus caballus ENSECAG00000006647 I 0.777
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.777
gfi1aa Danio rerio ENSDARG00000020746 I 0.777
GFI1 Homo sapiens ENSG00000162676 D 0.777
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.777
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.777
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.777
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.777
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.777
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.777
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.777
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.777
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.777
GFI1 Canis familiaris ENSCAFG00000020155 I 0.777
GFI1 Bos taurus ENSBTAG00000016723 I 0.777
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.777
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.777
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.777
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.777
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.777
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.777
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.777
Gfi1 Mus musculus ENSMUSG00000029275 D 0.777
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.776
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.773
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.773
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.772
GE14143 Drosophila yakuba FBgn0231766 I 0.770
GH13715 Drosophila grimshawi FBgn0121191 I 0.770
GL26188 Drosophila persimilis FBgn0163770 I 0.770
GG10437 Drosophila erecta FBgn0102746 I 0.770
GF15430 Drosophila ananassae FBgn0092455 I 0.770
sens-2 Drosophila melanogaster FBgn0051632 D 0.770
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.770
GM16223 Drosophila sechellia FBgn0171139 I 0.770
GI23984 Drosophila mojavensis FBgn0146708 I 0.770
GK24242 Drosophila willistoni FBgn0226203 I 0.770
MDOA011065 Musca domestica MDOA011065 I 0.770
GJ21268 Drosophila virilis FBgn0208401 I 0.770
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.769
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.769
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.768
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.767
LotgiG129344 Lottia gigantea LotgiG129344 I 0.766
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.765
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.763
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.763
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.763
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.763
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.762
LotgiG83709 Lottia gigantea LotgiG83709 I 0.762
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.762
NEMVEDRAFT_v1g182742 Nematostella vectensis NEMVEDRAFT_v1g182742 I 0.761
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.761