CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLOCG00000011655
(
Lepisosteus oculatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSLOCG00000011655
T097721_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.794
0.913
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.794
0.913
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.794
0.913
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.794
0.913
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.779
0.876
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.779
0.876
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.779
0.876
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.779
0.876
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.779
0.876
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.779
0.876
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.779
0.876
ZNF143
M10249_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.779
0.876
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLOCP00000014322
C2H2 ZF
193
217
FRCDYEGCGRLYTTAHHLKVHERAH
ENSLOCP00000014322
C2H2 ZF
223
247
YRCDVQSCGKAFATGYGLKSHVRTH
ENSLOCP00000014322
C2H2 ZF
253
277
YKCPEDMCSKAFKTSGDLQKHIRTH
ENSLOCP00000014322
C2H2 ZF
283
307
FKCPFEGCGRSFTTSNIRKVHIRTH
ENSLOCP00000014322
C2H2 ZF
313
337
YMCSEPGCGRGFASATNYKNHMRIH
ENSLOCP00000014322
C2H2 ZF
343
367
YVCTVPGCGKRFTEYSSLYKHHVVH
ENSLOCP00000014322
C2H2 ZF
373
396
YSCNHCGKTYRQTSTLAMHKRTTH
ENSLOCP00000014333
C2H2 ZF
164
188
FRCDYEGCGRLYTTAHHLKVHERAH
ENSLOCP00000014333
C2H2 ZF
194
218
YRCDVQSCGKAFATGYGLKSHVRTH
ENSLOCP00000014333
C2H2 ZF
224
248
YKCPEDMCSKAFKTSGDLQKHIRTH
ENSLOCP00000014333
C2H2 ZF
254
278
FKCPFEGCGRSFTTSNIRKVHIRTH
ENSLOCP00000014333
C2H2 ZF
284
308
YMCSEPGCGRGFASATNYKNHMRIH
ENSLOCP00000014333
C2H2 ZF
314
338
YVCTVPGCGKRFTEYSSLYKHHVVH
ENSLOCP00000014333
C2H2 ZF
344
367
YSCNHCGKTYRQTSTLAMHKRTTH
Links
Other
C2H2 ZF
family TFs
Other
Lepisosteus oculatus
TFs
116 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy