ENSLOCG00000011983 (Lepisosteus oculatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLOCG00000011983 T097728_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG

CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.818 0.974
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK

MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.818 0.974
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV

BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.818 0.974
GLI3
M10167_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.818 0.974
GLI3
M10168_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.818 0.974
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY

RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.818 0.974
Gli2
M01024_2.00
Mus musculus
NGACCACCYN

NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.817 0.939
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB

VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.817 0.939
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR

YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.817 0.939
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN

NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.817 0.939
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG

CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.817 0.939
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG

CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.817 0.939
GLI2
M10114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.817 0.939
GLI2
M10115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.817 0.939
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG

CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.817 0.939
Gli1
M01023_2.00
Mus musculus
NGACCACCHN

NDGGTGGTCN
PBM
Peterson et al.(2012)
Gli1
0.787 0.878
GLI1
M02643_2.00
Homo sapiens
GACCACCCAMG

CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI1
0.787 0.878
Gli1
M08976_2.00
Mus musculus
RGRCCACCCASV

BSTGGGTGGYCY
Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C
0.787 0.878
GLI1
M10176_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q2
0.787 0.878
GLI1
M10177_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3_01
0.787 0.878
GLI1
M10178_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3
0.787 0.878
GLI1
M10179_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI_Q6
0.787 0.878
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN

NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.771 0.965
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS

STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.771 0.965
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR

YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.771 0.965
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000014745 C2H2 ZF 485 510
ENSLOCP00000014745 C2H2 ZF 518 545
ENSLOCP00000014745 C2H2 ZF 551 575
ENSLOCP00000014745 C2H2 ZF 581 606
ENSLOCP00000014745 C2H2 ZF 612 637

Links

Other C2H2 ZF family TFs
Other Lepisosteus oculatus TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000762302 Malus domestica MDP0000762302 D 0.000
NAC012 Arabidopsis thaliana AT1G32770 D 0.000
SMB Arabidopsis thaliana AT1G79580 D 0.000
BRN2 Arabidopsis thaliana AT4G10350 D 0.000
evm.TU.supercontig_118.26 Carica papaya evm.TU.supercontig_118.26 I 0.000
Bostr.3359s0081 Boechera stricta Bostr.3359s0081 I 0.000
Bostr.3359s0042 Boechera stricta Bostr.3359s0042 I 0.000
Bostr.25463s0283 Boechera stricta Bostr.25463s0283 I 0.000
Bostr.20129s0396 Boechera stricta Bostr.20129s0396 I 0.000
Aquca_030_00252 Aquilegia coerulea Aquca_030_00252 I 0.000
Aquca_014_00032 Aquilegia coerulea Aquca_014_00032 I 0.000
mgf025569m Mimulus guttatus mgf025569m I 0.000
mgf017656m Mimulus guttatus mgf017656m I 0.000
mg017416m Mimulus guttatus mg017416m I 0.000
Cagra.12686s0005 Capsella grandiflora Cagra.12686s0005 I 0.000
Cagra.14513s0001 Capsella grandiflora Cagra.14513s0001 I 0.000
Cagra.1725s0032 Capsella grandiflora Cagra.1725s0032 I 0.000
Eucgr.E01053 Eucalyptus grandis Eucgr.E01053 I 0.000
Ciclev10024588m.g Citrus clementina Ciclev10024588m.g I 0.000
Ciclev10021141m.g Citrus clementina Ciclev10021141m.g I 0.000
Ciclev10006623m.g Citrus clementina Ciclev10006623m.g I 0.000
Carubv10020504m.g Capsella rubella Carubv10020504m.g I 0.000
Carubv10011900m.g Capsella rubella Carubv10011900m.g I 0.000
Carubv10010920m.g Capsella rubella Carubv10010920m.g I 0.000
Carubv10003879m.g Capsella rubella Carubv10003879m.g I 0.000
Cagra.6133s0030 Capsella grandiflora Cagra.6133s0030 I 0.000
Cucsa.240210 Cucumis sativus Cucsa.240210 I 0.000
Cucsa.237820 Cucumis sativus Cucsa.237820 I 0.000
Cucsa.193460 Cucumis sativus Cucsa.193460 I 0.000
Cla012576 Citrullus lanatus Cla012576 I 0.000
Cla011508 Citrullus lanatus Cla011508 I 0.000
Cla005561 Citrullus lanatus Cla005561 I 0.000
Ca_15792 Cicer arietinum Ca_15792 I 0.000
Ca_13929 Cicer arietinum Ca_13929 I 0.000
SMB Vitis vinifera VIT_19s0085g01210 I 0.000
VIT_18s0089g01120 Vitis vinifera VIT_18s0089g01120 I 0.000
TRIUR3_28259 Triticum urartu TRIUR3_28259 I 0.000
TRIUR3_14210 Triticum urartu TRIUR3_14210 I 0.000
Traes_7DL_AD6EAD1A6 Triticum aestivum Traes_7DL_AD6EAD1A6 I 0.000
Pm010886 Prunus mume Pm010886 I 0.000
Pm022820 Prunus mume Pm022820 I 0.000
cassava4621.m1 Manihot esculenta cassava4621.m1 I 0.000
cassava45846.m1 Manihot esculenta cassava45846.m1 I 0.000
cassava42638.valid.m1 Manihot esculenta cassava42638.valid.m1 I 0.000
cassava39971.m1 Manihot esculenta cassava39971.m1 I 0.000
cassava32687.m1 Manihot esculenta cassava32687.m1 I 0.000
cassava32649.m1 Manihot esculenta cassava32649.m1 I 0.000
30068.m002591 Ricinus communis 30068.m002591 I 0.000
29725.m000235 Ricinus communis 29725.m000235 I 0.000
29382.m000084 Ricinus communis 29382.m000084 I 0.000
Pm024260 Prunus mume Pm024260 I 0.000
Traes_7DL_AD6EAD1A61 Triticum aestivum Traes_7DL_AD6EAD1A61 I 0.000
LjSGA_059487.1 Lotus japonicus LjSGA_059487.1 I 0.000
SapurV1A.0093s0460 Salix purpurea SapurV1A.0093s0460 I 0.000
Pavir.J21162 Panicum virgatum Pavir.J21162 I 0.000
Pavir.J20698 Panicum virgatum Pavir.J20698 I 0.000
Pavir.J07268 Panicum virgatum Pavir.J07268 I 0.000
Pavir.J05053 Panicum virgatum Pavir.J05053 I 0.000
Pavir.Gb01599 Panicum virgatum Pavir.Gb01599 I 0.000
Pavir.Da01009 Panicum virgatum Pavir.Da01009 I 0.000
Pavir.Ab01037 Panicum virgatum Pavir.Ab01037 I 0.000
Pavir.Aa02770 Panicum virgatum Pavir.Aa02770 I 0.000
orange1.1g046523m.g Citrus sinensis orange1.1g046523m.g I 0.000
SapurV1A.0131s0060 Salix purpurea SapurV1A.0131s0060 I 0.000
SapurV1A.0164s0070 Salix purpurea SapurV1A.0164s0070 I 0.000
PK22182.1 Cannabis sativa PK22182.1 I 0.000
PK10271.1 Cannabis sativa PK10271.1 I 0.000
Thhalv10029403m.g Eutrema salsugineum Thhalv10029403m.g I 0.000
Thhalv10019534m.g Eutrema salsugineum Thhalv10019534m.g I 0.000
Thhalv10009336m.g Eutrema salsugineum Thhalv10009336m.g I 0.000
Thhalv10008226m.g Eutrema salsugineum Thhalv10008226m.g I 0.000
SapurV1A.2717s0010 Salix purpurea SapurV1A.2717s0010 I 0.000
SapurV1A.1219s0030 Salix purpurea SapurV1A.1219s0030 I 0.000
SapurV1A.0941s0070 Salix purpurea SapurV1A.0941s0070 I 0.000
SapurV1A.0907s0070 Salix purpurea SapurV1A.0907s0070 I 0.000
orange1.1g042376m.g Citrus sinensis orange1.1g042376m.g I 0.000
orange1.1g014260m.g Citrus sinensis orange1.1g014260m.g I 0.000
Eucgr.F04097 Eucalyptus grandis Eucgr.F04097 I 0.000
Lus10001664.g Linum usitatissimum Lus10001664.g I 0.000
Gorai.008G259700 Gossypium raimondii Gorai.008G259700 I 0.000
Gorai.008G130300 Gossypium raimondii Gorai.008G130300 I 0.000
Gorai.004G268500 Gossypium raimondii Gorai.004G268500 I 0.000
Gorai.004G267300 Gossypium raimondii Gorai.004G267300 I 0.000
Gorai.004G129200 Gossypium raimondii Gorai.004G129200 I 0.000
Gorai.003G077700 Gossypium raimondii Gorai.003G077700 I 0.000
gene31175-v1.0-hybrid Fragaria vesca gene31175-v1.0-hybrid I 0.000
gene19898-v1.0-hybrid Fragaria vesca gene19898-v1.0-hybrid I 0.000
gene01881-v1.0-hybrid Fragaria vesca gene01881-v1.0-hybrid I 0.000
Lus10008271.g Linum usitatissimum Lus10008271.g I 0.000
Lus10009939.g Linum usitatissimum Lus10009939.g I 0.000
MDP0000652584 Malus domestica MDP0000652584 I 0.000
MDP0000558493 Malus domestica MDP0000558493 I 0.000
MDP0000501518 Malus domestica MDP0000501518 I 0.000
MDP0000257674 Malus domestica MDP0000257674 I 0.000
MDP0000140229 Malus domestica MDP0000140229 I 0.000
Lus10039153.g Linum usitatissimum Lus10039153.g I 0.000
Lus10033239.g Linum usitatissimum Lus10033239.g I 0.000
Lus10030143.g Linum usitatissimum Lus10030143.g I 0.000
Lus10017340.g Linum usitatissimum Lus10017340.g I 0.000
Lus10013782.g Linum usitatissimum Lus10013782.g I 0.000
evm.TU.supercontig_37.89 Carica papaya evm.TU.supercontig_37.89 I 0.000
Traes_7DL_1AD9A3E8D Triticum aestivum Traes_7DL_1AD9A3E8D I 0.000
OB06G24850 Oryza brachyantha OB06G24850 I 0.000
GRMZM2G435824 Zea mays GRMZM2G435824 I 0.000
GRMZM2G155816 Zea mays GRMZM2G155816 I 0.000
GRMZM2G104074 Zea mays GRMZM2G104074 I 0.000
GRMZM2G099144 Zea mays GRMZM2G099144 I 0.000
GRMZM2G092465 Zea mays GRMZM2G092465 I 0.000
GRMZM2G041746 Zea mays GRMZM2G041746 I 0.000
GLYMA15G42050 Glycine max GLYMA15G42050 I 0.000
GLYMA12G00540 Glycine max GLYMA12G00540 I 0.000
GLYMA09G36820 Glycine max GLYMA09G36820 I 0.000
GLYMA08G17140 Glycine max GLYMA08G17140 I 0.000
GSMUA_Achr2G05640_001 Musa acuminata GSMUA_Achr2G05640_001 I 0.000
GSMUA_Achr2G20020_001 Musa acuminata GSMUA_Achr2G20020_001 I 0.000
OB04G21050 Oryza brachyantha OB04G21050 I 0.000
OB02G19660 Oryza brachyantha OB02G19660 I 0.000
MTR_4g035590 Medicago truncatula MTR_4g035590 I 0.000
MTR_2g062730 Medicago truncatula MTR_2g062730 I 0.000
MLOC_66924 Hordeum vulgare MLOC_66924 I 0.000
MLOC_19175 Hordeum vulgare MLOC_19175 I 0.000
MLOC_17128 Hordeum vulgare MLOC_17128 I 0.000
LPERR06G14120 Leersia perrieri LPERR06G14120 I 0.000
LPERR02G09170 Leersia perrieri LPERR02G09170 I 0.000
GSMUA_Achr6G28890_001 Musa acuminata GSMUA_Achr6G28890_001 I 0.000
ANAC015 Arabidopsis lyrata fgenesh2_kg.1__3458__AT1G33280.1 I 0.000
ANAC012 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002619 I 0.000
F775_42361 Aegilops tauschii F775_42361 I 0.000
Bo6g123980 Brassica oleracea Bo6g123980 I 0.000
Bo6g080930 Brassica oleracea Bo6g080930 I 0.000
Bo5g049360 Brassica oleracea Bo5g049360 I 0.000
Bo2g095440 Brassica oleracea Bo2g095440 I 0.000
BGIOSGA034998 Oryza indica BGIOSGA034998 I 0.000
BGIOSGA021116 Oryza indica BGIOSGA021116 I 0.000
BGIOSGA015018 Oryza indica BGIOSGA015018 I 0.000
BGIOSGA007898 Oryza indica BGIOSGA007898 I 0.000
BRN1 Arabidopsis thaliana AT1G33280 I 0.000
AMTR_s00099p00131560 Amborella trichopoda AMTR_s00099p00131560 I 0.000
Bo9g088300 Brassica oleracea Bo9g088300 I 0.000
Bra000709 Brassica rapa Bra000709 I 0.000
F775_23174 Aegilops tauschii F775_23174 I 0.000
F775_11081 Aegilops tauschii F775_11081 I 0.000
BRADI5G11247 Brachypodium distachyon BRADI5G11247 I 0.000
BRADI3G09520 Brachypodium distachyon BRADI3G09520 I 0.000
BRADI1G38730 Brachypodium distachyon BRADI1G38730 I 0.000
Bra037914 Brassica rapa Bra037914 I 0.000
Bra035127 Brassica rapa Bra035127 I 0.000
Bra023288 Brassica rapa Bra023288 I 0.000
Bra008423 Brassica rapa Bra008423 I 0.000
Bra003602 Brassica rapa Bra003602 I 0.000
ANAC070 Arabidopsis lyrata Al_scaffold_0006_3164 I 0.000
Traes_7AL_B000BC0DD Triticum aestivum Traes_7AL_B000BC0DD I 0.000
SMB Arabidopsis lyrata scaffold_202942.1 I 0.000
Sb10g020860 Sorghum bicolor Sb10g020860 I 0.000
Sb07g001550 Sorghum bicolor Sb07g001550 I 0.000
Sb06g017720 Sorghum bicolor Sb06g017720 I 0.000
Sb04g009180 Sorghum bicolor Sb04g009180 I 0.000
PRUPE_ppa026376mg Prunus persica PRUPE_ppa026376mg I 0.000
PRUPE_ppa025341mg Prunus persica PRUPE_ppa025341mg I 0.000
PRUPE_ppa006801mg Prunus persica PRUPE_ppa006801mg I 0.000
POPTR_0019s09400 Populus trichocarpa POPTR_0019s09400 I 0.000
POPTR_0013s09280 Populus trichocarpa POPTR_0013s09280 I 0.000
Si007822m.g Setaria italica Si007822m.g I 0.000
Si012319m.g Setaria italica Si012319m.g I 0.000
Traes_7AL_46F73E667 Triticum aestivum Traes_7AL_46F73E667 I 0.000
Traes_2DL_70F83D4B9 Triticum aestivum Traes_2DL_70F83D4B9 I 0.000
Traes_2BL_209C14A8F Triticum aestivum Traes_2BL_209C14A8F I 0.000
Traes_2AL_F0B17F0EA Triticum aestivum Traes_2AL_F0B17F0EA I 0.000
TCM_036034 Theobroma cacao TCM_036034 I 0.000
TCM_033728 Theobroma cacao TCM_033728 I 0.000
TCM_015621 Theobroma cacao TCM_015621 I 0.000
Solyc12g017400.1 Solanum lycopersicum Solyc12g017400.1 I 0.000
Solyc10g005010.2 Solanum lycopersicum Solyc10g005010.2 I 0.000
Si017641m.g Setaria italica Si017641m.g I 0.000
POPTR_0011s15640 Populus trichocarpa POPTR_0011s15640 I 0.000
POPTR_0010s18420 Populus trichocarpa POPTR_0010s18420 I 0.000
POPTR_0008s07950 Populus trichocarpa POPTR_0008s07950 I 0.000
ONIVA04G12040 Oryza nivara ONIVA04G12040 I 0.000
ONIVA02G12010 Oryza nivara ONIVA02G12010 I 0.000
OMERI06G17980 Oryza meridionalis OMERI06G17980 I 0.000
OLONG_020428 Oryza longistaminata OLONG_020428 I 0.000
OLONG_007664 Oryza longistaminata OLONG_007664 I 0.000
OGLUM06G18230 Oryza glumaepatula OGLUM06G18230 I 0.000
OGLUM04G13590 Oryza glumaepatula OGLUM04G13590 I 0.000
OGLUM02G10770 Oryza glumaepatula OGLUM02G10770 I 0.000
OBART06G17120 Oryza barthii OBART06G17120 I 0.000
OBART04G13830 Oryza barthii OBART04G13830 I 0.000
ONIVA06G20460 Oryza nivara ONIVA06G20460 I 0.000
OPUNC02G09610 Oryza punctata OPUNC02G09610 I 0.000
POPTR_0001s45250 Populus trichocarpa POPTR_0001s45250 I 0.000
PGSC0003DMG400011268 Solanum tuberosum PGSC0003DMG400011268 I 0.000
PGSC0003DMG400009665 Solanum tuberosum PGSC0003DMG400009665 I 0.000
OS06G0530400 Oryza sativa OS06G0530400 I 0.000
OS02G0252200 Oryza sativa OS02G0252200 I 0.000
ORUFI06G18140 Oryza rufipogon ORUFI06G18140 I 0.000
ORUFI04G15090 Oryza rufipogon ORUFI04G15090 I 0.000
ORUFI02G10740 Oryza rufipogon ORUFI02G10740 I 0.000
ORGLA02G0097800 Oryza glaberrima ORGLA02G0097800 I 0.000
OPUNC06G15490 Oryza punctata OPUNC06G15490 I 0.000
OBART02G10820 Oryza barthii OBART02G10820 I 0.000