CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF550
(
Macaca mulatta
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSMMUG00000006122
T099212_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF550
M07772_2.00
Homo sapiens
TGCCYTAGCMBWSRYTYY
RRARYSWVKGCTARGGCA
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF550.RCADE.OriginalMapping
0.827
0.995
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000008048
C2H2 ZF
157
179
YKCKQCGKGFNRKWYLVRHQRVH
ENSMMUP00000008048
C2H2 ZF
185
207
YECNACGKAFSQSSTLIRHYLIH
ENSMMUP00000008048
C2H2 ZF
213
235
YKCLECGKAFKRRSYLMQHHPIH
ENSMMUP00000008048
C2H2 ZF
241
263
YECSQCRKAFTHRSTFIRHNRTH
ENSMMUP00000008048
C2H2 ZF
269
291
FECKECKKAFSNRAHLIQHYIIH
ENSMMUP00000008048
C2H2 ZF
297
319
YDCMACGKAFRCSSELIQHQRIH
ENSMMUP00000008048
C2H2 ZF
325
347
YECTQCGKAFHRSTYLIQHSVIH
ENSMMUP00000008048
C2H2 ZF
353
375
YKCIECGKAFKRRSHLLQHQRVH
ENSMMUP00000031401
C2H2 ZF
198
220
YKCKQCGKGFNRKWYLVRHQRVH
ENSMMUP00000031401
C2H2 ZF
226
248
YECNACGKAFSQSSTLIRHYLIH
ENSMMUP00000031401
C2H2 ZF
254
276
YKCLECGKAFKRRSYLMQHHPIH
ENSMMUP00000031401
C2H2 ZF
282
304
YECSQCRKAFTHRSTFIRHNRTH
ENSMMUP00000031401
C2H2 ZF
310
332
FECKECKKAFSNRAHLIQHYIIH
ENSMMUP00000031401
C2H2 ZF
338
360
YDCMACGKAFRCSSELIQHQRIH
ENSMMUP00000031401
C2H2 ZF
366
388
YECTQCGKAFHRSTYLIQHSVIH
ENSMMUP00000031401
C2H2 ZF
394
416
YKCIECGKAFKRRSHLLQHQRVH
Links
Other
C2H2 ZF
family TFs
Other
Macaca mulatta
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy