SCRT2 (Monodelphis domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMODG00000019528 T100131_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SCRT2
M02925_2.00
Homo sapiens
RHGCAACAGGTGB

VCACCTGTTGCDY
SELEX
Jolma et al.(2013)
SCRT2_1
0.796 0.927
SCRT2
M04643_2.00
Homo sapiens
NGCAACAGGTD

HACCTGTTGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX
0.796 0.927
SCRT2
M04644_2.00
Homo sapiens
NGCRACAGGTG

CACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX
0.796 0.927
SCRT1
M02929_2.00
Homo sapiens
RHKCAACAGGTGKNH

DNMCACCTGTTGMDY
SELEX
Jolma et al.(2013)
SCRT1_1
0.784 0.891
SCRT1
M04655_2.00
Homo sapiens
NKCAACAGGTD

HACCTGTTGMN
SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX
0.784 0.891
SCRT1
M08397_2.00
Homo sapiens
RWKCAACAGGTG

CACCTGTTGMWY
ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE
0.784 0.891
SCRT1
M04656_2.00
Homo sapiens
NGCRACAGGTD

HACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX
0.784 0.891
scrt
M03673_2.00
Drosophila melanogaster
RHGCAACAGGTGK

MCACCTGTTGCDY
SELEX
Nitta et al.(2015)
scrt_1
0.780 0.855
scrt
M06085_2.00
Drosophila melanogaster
MCCACCTGTTG

CAACAGGTGGK
B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880
0.780 0.855
scrt
M06086_2.00
Drosophila melanogaster
DNKCAACAGGTGK

MCACCTGTTGMNH
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880
0.780 0.855
scrt
M06087_2.00
Drosophila melanogaster
VMCACCTGTTGMN

NKCAACAGGTGKB
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880
0.780 0.855
CG12605
M03691_2.00
Drosophila melanogaster
RHGCAACAGGTGN

NCACCTGTTGCDY
SELEX
Nitta et al.(2015)
CG12605_1
0.776 0.836
CG12605
M06139_2.00
Drosophila melanogaster
CACCTGTKG

CMACAGGTG
B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481
0.776 0.836
CG12605
M06140_2.00
Drosophila melanogaster
MCACCTGTKGVNN

NNBCMACAGGTGK
B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481
0.776 0.836
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000024360 C2H2 ZF 149 171
ENSMODP00000024360 C2H2 ZF 181 202
ENSMODP00000024360 C2H2 ZF 206 228
ENSMODP00000024360 C2H2 ZF 234 256
ENSMODP00000024360 C2H2 ZF 262 280

Links

Other C2H2 ZF family TFs
Other Monodelphis domestica TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HOX6 Oryza sativa OS09G0528200 D 0.000
F775_30991 Aegilops tauschii F775_30991 I 0.000
SapurV1A.0617s0090 Salix purpurea SapurV1A.0617s0090 I 0.000
Eucgr.I02464 Eucalyptus grandis Eucgr.I02464 I 0.000
TRIUR3_11780 Triticum urartu TRIUR3_11780 I 0.000
Traes_5DL_96F9EED93 Triticum aestivum Traes_5DL_96F9EED93 I 0.000
Traes_5BL_9C32B27E2 Triticum aestivum Traes_5BL_9C32B27E2 I 0.000
OPUNC09G15600 Oryza punctata OPUNC09G15600 I 0.000
OMERI09G12780 Oryza meridionalis OMERI09G12780 I 0.000
OB09G23870 Oryza brachyantha OB09G23870 I 0.000
MLOC_69710 Hordeum vulgare MLOC_69710 I 0.000
LPERR09G13180 Leersia perrieri LPERR09G13180 I 0.000
LPERR09G05860 Leersia perrieri LPERR09G05860 I 0.000
GSMUA_Achr1G18670_001 Musa acuminata GSMUA_Achr1G18670_001 I 0.000
SapurV1A.2485s0010 Salix purpurea SapurV1A.2485s0010 I 0.000