CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bcl6b
(
Mus musculus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSMUSG00000000317
T100968_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Bcl6b
M00128_2.00
Mus musculus
NYYYTYCYWNNN
NNNWRGRARRRN
PBM
Badis et al.(2009)
Bcl6b_0961
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL6B
M02896_2.00
Homo sapiens
TGCTTTCTAGGAATTMM
KKAATTCCTAGAAAGCA
SELEX
Jolma et al.(2013)
BCL6B_1
0.818
0.983
BCL6B
M04499_2.00
Homo sapiens
NNGCTTTCKAGGAAHN
NDTTCCTMGAAAGCNN
SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_1
0.818
0.983
BCL6B
M04500_2.00
Homo sapiens
NDTTCCTCGATTRCVN
NBGYAATCGAGGAAHN
SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_2
0.818
0.983
BCL6B
M04501_2.00
Homo sapiens
NHGCTTTCTAGGAAHN
NDTTCCTAGAAAGCDN
SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_1
0.818
0.983
BCL6B
M04502_2.00
Homo sapiens
NWTTCCTAGATTACRN
NYGTAATCTAGGAAWN
SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_2
0.818
0.983
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00128_2.00
C2H2 ZF
16
38
YKCQLCRSAFRYKGNLASHRTVH
M00128_2.00
C2H2 ZF
44
66
YRCSICGARFNRPANLKTHSRIH
M00128_2.00
C2H2 ZF
72
94
YKCETCGSRFVQVAHLRAHVLIH
M00128_2.00
C2H2 ZF
100
122
YPCPTCGTRFRHLQTLKSHVRIH
M00128_2.00
C2H2 ZF
128
151
YHCDPCGLHFRHKSQLRLHLRQKH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000000326
C2H2 ZF
323
345
YKCQLCRSAFRYKGNLASHRTVH
ENSMUSP00000000326
C2H2 ZF
351
373
YRCSICGARFNRPANLKTHSRIH
ENSMUSP00000000326
C2H2 ZF
379
401
YKCETCGSRFVQVAHLRAHVLIH
ENSMUSP00000000326
C2H2 ZF
407
429
YPCPTCGTRFRHLQTLKSHVRIH
ENSMUSP00000000326
C2H2 ZF
435
458
YHCDPCGLHFRHKSQLRLHLRQKH
Links
Other
C2H2 ZF
family TFs
Other
Mus musculus
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy