Ctcf (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000005698 T100985_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Ctcf
M08022_2.00
Mus musculus
RSYGCCMYCTDSTGG

CCASHAGRKGGCRSY
ChIP-seq
Chen et al.(2011)
SRP000217_Ctcf
(Direct) (Direct)
Ctcf
M08966_2.00
Mus musculus
VBRSYGCCMYCTRSYGGYNR

YNRCCRSYAGRKGGCRSYVB
Misc
Kulakovskiy et al.(2013)
CTCF_MOUSE.H11MO.0.A
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CTCF
M02878_2.00
Homo sapiens
WGCGCCMYCTAGYGGYV

BRCCRCTAGRKGGCGCW
SELEX
Jolma et al.(2013)
CTCF_1
0.827 1.000
CTCF
M05846_2.00
Homo sapiens
NNNNHBNVCKCCCCCHD

HDGGGGGMGBNVDNNNN
SMiLE-seq
Isakova et al.(2017)
CTCF
0.827 1.000
CTCF
M08289_2.00
Homo sapiens
VGCGCCMCCTVSHGG

CCDSBAGGKGGCGCB
ChIP-seq
Schmitges et al.(2016)
P49711_3-7.RCADE
0.827 1.000
CTCF
M07550_2.00
Homo sapiens
SYGCCMYCTDSTGGH

DCCASHAGRKGGCRS
ChIP-exo
Rhee et al.(2011)
CTCF_1
0.827 1.000
CTCF
M07551_2.00
Homo sapiens
YTTTTDTTTTT

AAAAAHAAAAR
ChIP-exo
Rhee et al.(2011)
CTCF_2
0.827 1.000
CTCF
M07552_2.00
Homo sapiens
AVACAGARDTCCHYTSTGT

ACASARDGGAHYTCTGTBT
ChIP-exo
Rhee et al.(2011)
CTCF_3
0.827 1.000
CTCF
M08087_2.00
Homo sapiens
BRSYGCCMYCTRSTGGYNR

YNRCCASYAGRKGGCRSYV
ChIP-seq
Mathelier et al.(2014)
MA0139.1
0.827 1.000
CTCF
M07862_2.00
Homo sapiens
VBRSYGCCMYCTRSYGGHNVN

NBNDCCRSYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
A549_CTCF_HudsonAlpha
0.827 1.000
CTCF
M07863_2.00
Homo sapiens
BRSYGCCMYCTRSYGG

CCRSYAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
AG04449_CTCF_UW
0.827 1.000
CTCF
M07864_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
AG04450_CTCF_UW
0.827 1.000
CTCF
M07865_2.00
Homo sapiens
VBRSYGCCMYCTRSTG

CASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
AG09309_CTCF_UW
0.827 1.000
CTCF
M07866_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
AG09319_CTCF_UW
0.827 1.000
CTCF
M07867_2.00
Homo sapiens
GCCMYCTDSTGGH

DCCASHAGRKGGC
ChIP-seq
Gerstein et al.(2012)
AG10803_CTCF_UW
0.827 1.000
CTCF
M07868_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
AoAF_CTCF_UW
0.827 1.000
CTCF
M07869_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
BJ_CTCF_UW
0.827 1.000
CTCF
M07870_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
Caco-2_CTCF_UW
0.827 1.000
CTCF
M07871_2.00
Homo sapiens
GCCMYCTRSTGGYVR

YBRCCASYAGRKGGC
ChIP-seq
Gerstein et al.(2012)
Fibrobl_CTCF_UT-A
0.827 1.000
CTCF
M07872_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
Gliobla_CTCF_UT-A
0.827 1.000
CTCF
M07873_2.00
Homo sapiens
BNNBRSYGCCMYCTRSYGGYN

NRCCRSYAGRKGGCRSYVNNV
ChIP-seq
Gerstein et al.(2012)
GM06990_CTCF_UW
0.827 1.000
CTCF
M07874_2.00
Homo sapiens
RSYGCCMYCTRSYGG

CCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
GM12864_CTCF_UW
0.827 1.000
CTCF
M07875_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12865_CTCF_UW
0.827 1.000
CTCF
M07876_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12872_CTCF_UW
0.827 1.000
CTCF
M07877_2.00
Homo sapiens
RSYGCCMYCTRSYGG

CCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
GM12873_CTCF_UW
0.827 1.000
CTCF
M07878_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12874_CTCF_UW
0.827 1.000
CTCF
M07879_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12875_CTCF_UW
0.827 1.000
CTCF
M07880_2.00
Homo sapiens
GCCMYCTRSTGGYNR

YNRCCASYAGRKGGC
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_Broad
0.827 1.000
CTCF
M07881_2.00
Homo sapiens
YGCCMYCTRSTGGHN

NDCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_Stanford
0.827 1.000
CTCF
M07882_2.00
Homo sapiens
YGCCMYCTRSTG

CASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_UT-A
0.827 1.000
CTCF
M07883_2.00
Homo sapiens
BRSYGCCMYCTRSTGGY

RCCASYAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_UW
0.827 1.000
CTCF
M07884_2.00
Homo sapiens
SYGCCMYCTRSTGGH

DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
H1-hESC_CTCF_Broad
0.827 1.000
CTCF
M07885_2.00
Homo sapiens
SYGCCMYCTRSYGGH

DCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
H1-hESC_CTCF_HudsonAlpha
0.827 1.000
CTCF
M07886_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HA-sp_CTCF_UW
0.827 1.000
CTCF
M07887_2.00
Homo sapiens
RSYGCCMYCTDSTGGYNR

YNRCCASHAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HBMEC_CTCF_UW
0.827 1.000
CTCF
M07888_2.00
Homo sapiens
YGCCMYCTRSTGGYN

NRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HCFaa_CTCF_UW
0.827 1.000
CTCF
M07889_2.00
Homo sapiens
YGCCMYCTDSTGGY

RCCASHAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HCPEpiC_CTCF_UW
0.827 1.000
CTCF
M07890_2.00
Homo sapiens
YGCCMYCTRSTGG

CCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HEEpiC_CTCF_UW
0.827 1.000
CTCF
M07891_2.00
Homo sapiens
RSYGCCMYCTRSTGGYNR

YNRCCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HEK293_CTCF_UW
0.827 1.000
CTCF
M07892_2.00
Homo sapiens
DSYGCCMYCTRSTGG

CCASYAGRKGGCRSH
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_Broad
0.827 1.000
CTCF
M07893_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_UT-A
0.827 1.000
CTCF
M07894_2.00
Homo sapiens
VBRSYGCCMYCTRSYGG

CCRSYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_UW
0.827 1.000
CTCF
M07895_2.00
Homo sapiens
VBRSYGCCMYCTRSTGGY

RCCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_Broad
0.827 1.000
CTCF
M07896_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_HudsonAlpha
0.827 1.000
CTCF
M07897_2.00
Homo sapiens
RSYGCCMYCTDSTGG

CCASHAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_UT-A
0.827 1.000
CTCF
M07898_2.00
Homo sapiens
YGCCMYCTRSTGGY

RCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_UW
0.827 1.000
CTCF
M07899_2.00
Homo sapiens
VBRSYGCCMYCTRSTGGYNR

YNRCCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HMEC_CTCF_Broad
0.827 1.000
CTCF
M07900_2.00
Homo sapiens
VBRSYGCCMYCTRSTGG

CCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HMEC_CTCF_UW
0.827 1.000
CTCF
M07901_2.00
Homo sapiens
CCMYCTRSTGG

CCASYAGRKGG
ChIP-seq
Gerstein et al.(2012)
HMF_CTCF_UW
0.827 1.000
CTCF
M07902_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HPAF_CTCF_UW
0.827 1.000
CTCF
M07903_2.00
Homo sapiens
YGCCMYCTDSTGG

CCASHAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HPF_CTCF_UW
0.827 1.000
CTCF
M07904_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HRE_CTCF_UW
0.827 1.000
CTCF
M07905_2.00
Homo sapiens
YGCCMYCTRSTG

CASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HRPEpiC_CTCF_UW
0.827 1.000
CTCF
M07906_2.00
Homo sapiens
NNBRSYGCCMYCTDSTGG

CCASHAGRKGGCRSYVNN
ChIP-seq
Gerstein et al.(2012)
HSMM_CTCF_Broad
0.827 1.000
CTCF
M07907_2.00
Homo sapiens
BRSYGCCMYCTDSTGGYN

NRCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
HSMMtube_CTCF_Broad
0.827 1.000
CTCF
M07908_2.00
Homo sapiens
NVBRSYGCCMYCTRSYGGYNV

BNRCCRSYAGRKGGCRSYVBN
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_Broad
0.827 1.000
CTCF
M07909_2.00
Homo sapiens
RSYRCCMYCTRSTGG

CCASYAGRKGGYRSY
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_UT-A
0.827 1.000
CTCF
M07910_2.00
Homo sapiens
BNVBRSYGCCMYCTRSYGGH

DCCRSYAGRKGGCRSYVBNV
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_UW
0.827 1.000
CTCF
M07911_2.00
Homo sapiens
RSYGCCMYCTRSYGGYNR

YNRCCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_Broad
0.827 1.000
CTCF
M07912_2.00
Homo sapiens
SYGCCMYCTDSTGGY

RCCASHAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_UT-A
0.827 1.000
CTCF
M07913_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_UW
0.827 1.000
CTCF
M07914_2.00
Homo sapiens
SYGCCMYCTRSTGGH

DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
MCF-7_CTCF_UT-A
0.827 1.000
CTCF
M07915_2.00
Homo sapiens
BRSYGCCMYCTDSTGGYNRNN

NNYNRCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
NH-A_CTCF_Broad
0.827 1.000
CTCF
M07916_2.00
Homo sapiens
BRSYGCCMYCTDSTGGY

RCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
NHDF-Ad_CTCF_Broad
0.827 1.000
CTCF
M07917_2.00
Homo sapiens
SYGCCMYCTRSTGGH

DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
NHEK_CTCF_Broad
0.827 1.000
CTCF
M07918_2.00
Homo sapiens
SYGCCMYCTRSYGG

CCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
NHEK_CTCF_UW
0.827 1.000
CTCF
M07919_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
NHLF_CTCF_Broad
0.827 1.000
CTCF
M07920_2.00
Homo sapiens
DSYGCCMYCTDSTGGYNR

YNRCCASHAGRKGGCRSH
ChIP-seq
Gerstein et al.(2012)
Osteobl_CTCF_Broad
0.827 1.000
CTCF
M07921_2.00
Homo sapiens
YGCCMYCTRSTGGYV

BRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
ProgFib_CTCF_UT-A
0.827 1.000
CTCF
M07922_2.00
Homo sapiens
YGCCMYCTRSYGG

CCRSYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
SAEC_CTCF_UW
0.827 1.000
CTCF
M07923_2.00
Homo sapiens
YGCCMYCTRSTGGYN

NRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
SK-N-SH_RA_UW
0.827 1.000
CTCF
M07924_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
T-47D_CTCF_HudsonAlpha
0.827 1.000
CTCF
M07925_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
WERI-Rb-1_CTCF_UW
0.827 1.000
CTCF
M08238_2.00
Homo sapiens
GCGCCCYCTGSYGGY

RCCRSCAGRGGGCGC
ChIP-seq
Najafabadi et al.(2015b)
CTCF
0.827 1.000
CTCF
M08869_2.00
Homo sapiens
BRSYGCCMYCTRSYGGYNR

YNRCCRSYAGRKGGCRSYV
Misc
Kulakovskiy et al.(2013)
CTCF_HUMAN.H11MO.0.A
0.827 1.000
CTCF
M09503_2.00
Homo sapiens
NBRSYGCCMYCTRSTGGHHR

YDDCCASYAGRKGGCRSYVN
Misc
Heinz et al.(2010)
CD4+-CTCF_Barski_et_al._1
0.827 1.000
CTCF
M09504_2.00
Homo sapiens
TGCAGTDCCNVNNNYDRCCA

TGGYHRNNNBNGGHACTGCA
Misc
Heinz et al.(2010)
CD4+-CTCF_Barski_et_al._2
0.827 1.000
CTCF
M10152_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_01
0.827 1.000
CTCF
M10153_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_02
0.827 1.000
CTCF
M10154_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_05
0.827 1.000
CTCF
M10155_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_06
0.827 1.000
CTCF
M10156_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_07
0.827 1.000
CTCF
M10157_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_08
0.827 1.000
CTCF
M10158_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_10
0.827 1.000
CTCF
M10159_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_Q3_01
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000005841 C2H2 ZF 266 288
ENSMUSP00000005841 C2H2 ZF 294 316
ENSMUSP00000005841 C2H2 ZF 322 345
ENSMUSP00000005841 C2H2 ZF 351 373
ENSMUSP00000005841 C2H2 ZF 379 401
ENSMUSP00000005841 C2H2 ZF 407 430
ENSMUSP00000005841 C2H2 ZF 437 460
ENSMUSP00000005841 C2H2 ZF 467 489
ENSMUSP00000005841 C2H2 ZF 495 517
ENSMUSP00000005841 C2H2 ZF 523 546
ENSMUSP00000005841 C2H2 ZF 555 575

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI063142 Acyrthosiphon pisum ACYPI063142 N 0.000
ACYPI068428 Acyrthosiphon pisum ACYPI068428 N 0.000
ACYPI087672 Acyrthosiphon pisum ACYPI087672 N 0.000
ACYPI45573 Acyrthosiphon pisum ACYPI45573 N 0.000