Ctcf (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000005698 T100985_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Ctcf
M08022_2.00
Mus musculus
RSYGCCMYCTDSTGG

CCASHAGRKGGCRSY
ChIP-seq
Chen et al.(2011)
SRP000217_Ctcf
(Direct) (Direct)
Ctcf
M08966_2.00
Mus musculus
VBRSYGCCMYCTRSYGGYNR

YNRCCRSYAGRKGGCRSYVB
Misc
Kulakovskiy et al.(2013)
CTCF_MOUSE.H11MO.0.A
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CTCF
M02878_2.00
Homo sapiens
WGCGCCMYCTAGYGGYV

BRCCRCTAGRKGGCGCW
SELEX
Jolma et al.(2013)
CTCF_1
0.827 1.000
CTCF
M05846_2.00
Homo sapiens
NNNNHBNVCKCCCCCHD

HDGGGGGMGBNVDNNNN
SMiLE-seq
Isakova et al.(2017)
CTCF
0.827 1.000
CTCF
M08289_2.00
Homo sapiens
VGCGCCMCCTVSHGG

CCDSBAGGKGGCGCB
ChIP-seq
Schmitges et al.(2016)
P49711_3-7.RCADE
0.827 1.000
CTCF
M07550_2.00
Homo sapiens
SYGCCMYCTDSTGGH

DCCASHAGRKGGCRS
ChIP-exo
Rhee et al.(2011)
CTCF_1
0.827 1.000
CTCF
M07551_2.00
Homo sapiens
YTTTTDTTTTT

AAAAAHAAAAR
ChIP-exo
Rhee et al.(2011)
CTCF_2
0.827 1.000
CTCF
M07552_2.00
Homo sapiens
AVACAGARDTCCHYTSTGT

ACASARDGGAHYTCTGTBT
ChIP-exo
Rhee et al.(2011)
CTCF_3
0.827 1.000
CTCF
M08087_2.00
Homo sapiens
BRSYGCCMYCTRSTGGYNR

YNRCCASYAGRKGGCRSYV
ChIP-seq
Mathelier et al.(2014)
MA0139.1
0.827 1.000
CTCF
M07862_2.00
Homo sapiens
VBRSYGCCMYCTRSYGGHNVN

NBNDCCRSYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
A549_CTCF_HudsonAlpha
0.827 1.000
CTCF
M07863_2.00
Homo sapiens
BRSYGCCMYCTRSYGG

CCRSYAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
AG04449_CTCF_UW
0.827 1.000
CTCF
M07864_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
AG04450_CTCF_UW
0.827 1.000
CTCF
M07865_2.00
Homo sapiens
VBRSYGCCMYCTRSTG

CASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
AG09309_CTCF_UW
0.827 1.000
CTCF
M07866_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
AG09319_CTCF_UW
0.827 1.000
CTCF
M07867_2.00
Homo sapiens
GCCMYCTDSTGGH

DCCASHAGRKGGC
ChIP-seq
Gerstein et al.(2012)
AG10803_CTCF_UW
0.827 1.000
CTCF
M07868_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
AoAF_CTCF_UW
0.827 1.000
CTCF
M07869_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
BJ_CTCF_UW
0.827 1.000
CTCF
M07870_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
Caco-2_CTCF_UW
0.827 1.000
CTCF
M07871_2.00
Homo sapiens
GCCMYCTRSTGGYVR

YBRCCASYAGRKGGC
ChIP-seq
Gerstein et al.(2012)
Fibrobl_CTCF_UT-A
0.827 1.000
CTCF
M07872_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
Gliobla_CTCF_UT-A
0.827 1.000
CTCF
M07873_2.00
Homo sapiens
BNNBRSYGCCMYCTRSYGGYN

NRCCRSYAGRKGGCRSYVNNV
ChIP-seq
Gerstein et al.(2012)
GM06990_CTCF_UW
0.827 1.000
CTCF
M07874_2.00
Homo sapiens
RSYGCCMYCTRSYGG

CCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
GM12864_CTCF_UW
0.827 1.000
CTCF
M07875_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12865_CTCF_UW
0.827 1.000
CTCF
M07876_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12872_CTCF_UW
0.827 1.000
CTCF
M07877_2.00
Homo sapiens
RSYGCCMYCTRSYGG

CCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
GM12873_CTCF_UW
0.827 1.000
CTCF
M07878_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12874_CTCF_UW
0.827 1.000
CTCF
M07879_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12875_CTCF_UW
0.827 1.000
CTCF
M07880_2.00
Homo sapiens
GCCMYCTRSTGGYNR

YNRCCASYAGRKGGC
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_Broad
0.827 1.000
CTCF
M07881_2.00
Homo sapiens
YGCCMYCTRSTGGHN

NDCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_Stanford
0.827 1.000
CTCF
M07882_2.00
Homo sapiens
YGCCMYCTRSTG

CASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_UT-A
0.827 1.000
CTCF
M07883_2.00
Homo sapiens
BRSYGCCMYCTRSTGGY

RCCASYAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_UW
0.827 1.000
CTCF
M07884_2.00
Homo sapiens
SYGCCMYCTRSTGGH

DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
H1-hESC_CTCF_Broad
0.827 1.000
CTCF
M07885_2.00
Homo sapiens
SYGCCMYCTRSYGGH

DCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
H1-hESC_CTCF_HudsonAlpha
0.827 1.000
CTCF
M07886_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HA-sp_CTCF_UW
0.827 1.000
CTCF
M07887_2.00
Homo sapiens
RSYGCCMYCTDSTGGYNR

YNRCCASHAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HBMEC_CTCF_UW
0.827 1.000
CTCF
M07888_2.00
Homo sapiens
YGCCMYCTRSTGGYN

NRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HCFaa_CTCF_UW
0.827 1.000
CTCF
M07889_2.00
Homo sapiens
YGCCMYCTDSTGGY

RCCASHAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HCPEpiC_CTCF_UW
0.827 1.000
CTCF
M07890_2.00
Homo sapiens
YGCCMYCTRSTGG

CCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HEEpiC_CTCF_UW
0.827 1.000
CTCF
M07891_2.00
Homo sapiens
RSYGCCMYCTRSTGGYNR

YNRCCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HEK293_CTCF_UW
0.827 1.000
CTCF
M07892_2.00
Homo sapiens
DSYGCCMYCTRSTGG

CCASYAGRKGGCRSH
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_Broad
0.827 1.000
CTCF
M07893_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_UT-A
0.827 1.000
CTCF
M07894_2.00
Homo sapiens
VBRSYGCCMYCTRSYGG

CCRSYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_UW
0.827 1.000
CTCF
M07895_2.00
Homo sapiens
VBRSYGCCMYCTRSTGGY

RCCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_Broad
0.827 1.000
CTCF
M07896_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_HudsonAlpha
0.827 1.000
CTCF
M07897_2.00
Homo sapiens
RSYGCCMYCTDSTGG

CCASHAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_UT-A
0.827 1.000
CTCF
M07898_2.00
Homo sapiens
YGCCMYCTRSTGGY

RCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_UW
0.827 1.000
CTCF
M07899_2.00
Homo sapiens
VBRSYGCCMYCTRSTGGYNR

YNRCCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HMEC_CTCF_Broad
0.827 1.000
CTCF
M07900_2.00
Homo sapiens
VBRSYGCCMYCTRSTGG

CCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HMEC_CTCF_UW
0.827 1.000
CTCF
M07901_2.00
Homo sapiens
CCMYCTRSTGG

CCASYAGRKGG
ChIP-seq
Gerstein et al.(2012)
HMF_CTCF_UW
0.827 1.000
CTCF
M07902_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HPAF_CTCF_UW
0.827 1.000
CTCF
M07903_2.00
Homo sapiens
YGCCMYCTDSTGG

CCASHAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HPF_CTCF_UW
0.827 1.000
CTCF
M07904_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HRE_CTCF_UW
0.827 1.000
CTCF
M07905_2.00
Homo sapiens
YGCCMYCTRSTG

CASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HRPEpiC_CTCF_UW
0.827 1.000
CTCF
M07906_2.00
Homo sapiens
NNBRSYGCCMYCTDSTGG

CCASHAGRKGGCRSYVNN
ChIP-seq
Gerstein et al.(2012)
HSMM_CTCF_Broad
0.827 1.000
CTCF
M07907_2.00
Homo sapiens
BRSYGCCMYCTDSTGGYN

NRCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
HSMMtube_CTCF_Broad
0.827 1.000
CTCF
M07908_2.00
Homo sapiens
NVBRSYGCCMYCTRSYGGYNV

BNRCCRSYAGRKGGCRSYVBN
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_Broad
0.827 1.000
CTCF
M07909_2.00
Homo sapiens
RSYRCCMYCTRSTGG

CCASYAGRKGGYRSY
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_UT-A
0.827 1.000
CTCF
M07910_2.00
Homo sapiens
BNVBRSYGCCMYCTRSYGGH

DCCRSYAGRKGGCRSYVBNV
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_UW
0.827 1.000
CTCF
M07911_2.00
Homo sapiens
RSYGCCMYCTRSYGGYNR

YNRCCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_Broad
0.827 1.000
CTCF
M07912_2.00
Homo sapiens
SYGCCMYCTDSTGGY

RCCASHAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_UT-A
0.827 1.000
CTCF
M07913_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_UW
0.827 1.000
CTCF
M07914_2.00
Homo sapiens
SYGCCMYCTRSTGGH

DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
MCF-7_CTCF_UT-A
0.827 1.000
CTCF
M07915_2.00
Homo sapiens
BRSYGCCMYCTDSTGGYNRNN

NNYNRCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
NH-A_CTCF_Broad
0.827 1.000
CTCF
M07916_2.00
Homo sapiens
BRSYGCCMYCTDSTGGY

RCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
NHDF-Ad_CTCF_Broad
0.827 1.000
CTCF
M07917_2.00
Homo sapiens
SYGCCMYCTRSTGGH

DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
NHEK_CTCF_Broad
0.827 1.000
CTCF
M07918_2.00
Homo sapiens
SYGCCMYCTRSYGG

CCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
NHEK_CTCF_UW
0.827 1.000
CTCF
M07919_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
NHLF_CTCF_Broad
0.827 1.000
CTCF
M07920_2.00
Homo sapiens
DSYGCCMYCTDSTGGYNR

YNRCCASHAGRKGGCRSH
ChIP-seq
Gerstein et al.(2012)
Osteobl_CTCF_Broad
0.827 1.000
CTCF
M07921_2.00
Homo sapiens
YGCCMYCTRSTGGYV

BRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
ProgFib_CTCF_UT-A
0.827 1.000
CTCF
M07922_2.00
Homo sapiens
YGCCMYCTRSYGG

CCRSYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
SAEC_CTCF_UW
0.827 1.000
CTCF
M07923_2.00
Homo sapiens
YGCCMYCTRSTGGYN

NRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
SK-N-SH_RA_UW
0.827 1.000
CTCF
M07924_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
T-47D_CTCF_HudsonAlpha
0.827 1.000
CTCF
M07925_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
WERI-Rb-1_CTCF_UW
0.827 1.000
CTCF
M08238_2.00
Homo sapiens
GCGCCCYCTGSYGGY

RCCRSCAGRGGGCGC
ChIP-seq
Najafabadi et al.(2015b)
CTCF
0.827 1.000
CTCF
M08869_2.00
Homo sapiens
BRSYGCCMYCTRSYGGYNR

YNRCCRSYAGRKGGCRSYV
Misc
Kulakovskiy et al.(2013)
CTCF_HUMAN.H11MO.0.A
0.827 1.000
CTCF
M09503_2.00
Homo sapiens
NBRSYGCCMYCTRSTGGHHR

YDDCCASYAGRKGGCRSYVN
Misc
Heinz et al.(2010)
CD4+-CTCF_Barski_et_al._1
0.827 1.000
CTCF
M09504_2.00
Homo sapiens
TGCAGTDCCNVNNNYDRCCA

TGGYHRNNNBNGGHACTGCA
Misc
Heinz et al.(2010)
CD4+-CTCF_Barski_et_al._2
0.827 1.000
CTCF
M10152_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_01
0.827 1.000
CTCF
M10153_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_02
0.827 1.000
CTCF
M10154_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_05
0.827 1.000
CTCF
M10155_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_06
0.827 1.000
CTCF
M10156_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_07
0.827 1.000
CTCF
M10157_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_08
0.827 1.000
CTCF
M10158_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_10
0.827 1.000
CTCF
M10159_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_Q3_01
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000005841 C2H2 ZF 266 288
ENSMUSP00000005841 C2H2 ZF 294 316
ENSMUSP00000005841 C2H2 ZF 322 345
ENSMUSP00000005841 C2H2 ZF 351 373
ENSMUSP00000005841 C2H2 ZF 379 401
ENSMUSP00000005841 C2H2 ZF 407 430
ENSMUSP00000005841 C2H2 ZF 437 460
ENSMUSP00000005841 C2H2 ZF 467 489
ENSMUSP00000005841 C2H2 ZF 495 517
ENSMUSP00000005841 C2H2 ZF 523 546
ENSMUSP00000005841 C2H2 ZF 555 575

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000003491 Ailuropoda melanoleuca ENSAMEG00000003491 I 0.000
ENSAMEG00000017208 Ailuropoda melanoleuca ENSAMEG00000017208 I 0.000
ENSAPLG00000010058 Anas platyrhynchos ENSAPLG00000010058 I 0.000
Afo_R000663 Aptenodytes forsteri Afo_R000663 I 0.000
ENSAMXG00000017952 Astyanax mexicanus ENSAMXG00000017952 I 0.000
ENSP00000256429-D1 Bos grunniens ENSP00000256429-D1 I 0.000
MBD2 Callithrix jacchus ENSCJAG00000001862 I 0.000
MBD3 Canis familiaris ENSCAFG00000019503 N 0.000
MBD2 Cavia porcellus ENSCPOG00000006832 I 0.000
Cmyd_10012649 Chelonia mydas Cmyd_10012649 I 0.000
ENSCSAG00000018106 Chlorocebus sabaeus ENSCSAG00000018106 I 0.000
mbd3a Danio rerio ENSDARG00000061774 I 0.000
MBD2 Dasypus novemcinctus ENSDNOG00000033421 I 0.000
ENSECAG00000022368 Equus caballus ENSECAG00000022368 I 0.000
MBD3 Equus caballus ENSECAG00000015485 I 0.000
ENSFCAG00000022047 Felis catus ENSFCAG00000022047 I 0.000
MBD3 Felis catus ENSFCAG00000000763 I 0.000
ENSGMOG00000008953 Gadus morhua ENSGMOG00000008953 I 0.000
MBD3 Gasterosteus aculeatus ENSGACG00000012755 I 0.000
MBD2 Gorilla gorilla ENSGGOG00000013402 I 0.000
MBD2 Homo sapiens ENSG00000134046 D 0.000
ENSSTOG00000011253 Ictidomys tridecemlineatus ENSSTOG00000011253 I 0.000
ENSLACG00000016038 Latimeria chalumnae ENSLACG00000016038 I 0.000
ENSLOCG00000006043 Lepisosteus oculatus ENSLOCG00000006043 N 0.000
MBD2 Loxodonta africana ENSLAFG00000014135 I 0.000
ENSP00000256429 Macaca fascicularis ENSP00000256429 I 0.000
ENSMMUG00000003136 Macaca mulatta ENSMMUG00000003136 I 0.000
ENSMEUG00000016480 Macropus eugenii ENSMEUG00000016480 I 0.000
MBD2 Microcebus murinus ENSMICG00000008970 I 0.000
MBD2 Monodelphis domestica ENSMODG00000011041 I 0.000
Mbd3 Mus musculus ENSMUSG00000035478 N 0.000
MBD3 Ochotona princeps ENSOPRG00000008719 I 0.000
Ogr03458 Ophisaurus gracilis Ogr03458 I 0.000
ENSOANG00000030623 Ornithorhynchus anatinus ENSOANG00000030623 I 0.000
MBD2 Oryctolagus cuniculus ENSOCUG00000021080 I 0.000
ENSOARG00000012359 Ovis aries ENSOARG00000012359 I 0.000
MBD2 Pan troglodytes ENSPTRG00000010033 I 0.000
ENSPANG00000021858 Papio anubis ENSPANG00000021858 I 0.000
Pvit_04402 Pogona vitticeps Pvit_04402 I 0.000
ENSPPYG00000009325 Pongo abelii ENSPPYG00000009325 I 0.000
ENSTSYG00000013361 Tarsius syrichta ENSTSYG00000013361 I 0.000
MBD3 Tetraodon nigroviridis ENSTNIG00000010627 N 0.000
ENSVPAG00000012298 Vicugna pacos ENSVPAG00000012298 N 0.000
ENSXMAG00000012716 Xiphophorus maculatus ENSXMAG00000012716 I 0.000