CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bcl6
(
Mus musculus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSMUSG00000022508
T101031_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA binding activity and DNA-binding transcription repressor activity, RNA polymerase II-specific. Acts upstream of or within several processes, including hemopoiesis; negative regulation of signal transduction; and regulation of lymphocyte activation. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; immune system; and liver and biliary system. Human ortholog(s) of this gene implicated in B-cell lymphoma and diffuse large B-cell lymphoma. Orthologous to human BCL6 (BCL6 transcription repressor). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Bcl6
M08024_2.00
Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD
ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim
(Direct)
(Direct)
Bcl6
M08097_2.00
Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN
ChIP-seq
Mathelier et al.(2014)
MA0463.1
(Direct)
(Direct)
Bcl6
M08972_2.00
Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN
Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A
(Direct)
(Direct)
Bcl6
M09513_2.00
Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN
Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL6
M00228_2.00
Homo sapiens
NNVNDVRANN
NNTYBHNBNN
PBM
Barrera et al.(2016)
BCL6_REF
0.827
1.000
BCL6
M04424_2.00
Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN
SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1
0.827
1.000
BCL6
M04425_2.00
Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN
SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2
0.827
1.000
BCL6
M08877_2.00
Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN
Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A
0.827
1.000
BCL6
M10180_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_01
0.827
1.000
BCL6
M10181_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_02
0.827
1.000
BCL6
M10182_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q3_01
0.827
1.000
BCL6
M10183_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q3
0.827
1.000
BCL6
M10184_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q6
0.827
1.000
BCL6
M04426_2.00
Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN
SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1
0.827
1.000
BCL6
M04427_2.00
Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN
SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2
0.827
1.000
BCL6
M00227_2.00
Homo sapiens
NTAATTRWNN
NNWYAATTAN
PBM
Barrera et al.(2016)
BCL6_H676Y
0.821
0.964
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000023151
C2H2 ZF
519
542
FFCNECDCRFSEEASLKRHTLQTH
ENSMUSP00000023151
C2H2 ZF
547
569
YKCDRCQASFRYKGNLASHKTVH
ENSMUSP00000023151
C2H2 ZF
575
597
YRCNICGAQFNRPANLKTHTRIH
ENSMUSP00000023151
C2H2 ZF
603
625
YKCETCGARFVQVAHLRAHVLIH
ENSMUSP00000023151
C2H2 ZF
631
653
YPCEICGTRFRHLQTLKSHLRIH
ENSMUSP00000023151
C2H2 ZF
659
682
YHCEKCNLHFRHKSQLRLHLRQKH
Links
Other
C2H2 ZF
family TFs
Other
Mus musculus
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy