Zkscan1 (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000029729 T101087_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Zkscan1
M00771_2.00
Mus musculus
NNNHDHDNNN

NNNHDHDNNN
PBM
Weirauch et al.(2013)
pTH2280
(Direct) (Direct)
Zkscan1
M08985_2.00
Mus musculus
DVHDBNCCTACTRTGTGCH

DGCACAYAGTAGGNVHDBH
Misc
Kulakovskiy et al.(2013)
ZKSC1_MOUSE.H11MO.0.A
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZKSCAN1
M05847_2.00
Homo sapiens
NNNCCTACTAHGH

DCDTAGTAGGNNN
SMiLE-seq
Isakova et al.(2017)
ZKSCAN1
0.825 0.993
ZKSCAN1
M08874_2.00
Homo sapiens
DVHDBNCCTACTRTGTGCH

DGCACAYAGTAGGNVHDBH
Misc
Kulakovskiy et al.(2013)
ZKSC1_HUMAN.H11MO.0.B
0.825 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00771_2.00 C2H2 ZF 16 38
M00771_2.00 C2H2 ZF 44 66
M00771_2.00 C2H2 ZF 72 94
M00771_2.00 C2H2 ZF 100 122
M00771_2.00 C2H2 ZF 128 150
M00771_2.00 C2H2 ZF 156 178

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000019660 C2H2 ZF 375 397
ENSMUSP00000019660 C2H2 ZF 403 425
ENSMUSP00000019660 C2H2 ZF 431 453
ENSMUSP00000019660 C2H2 ZF 459 481
ENSMUSP00000019660 C2H2 ZF 487 509
ENSMUSP00000019660 C2H2 ZF 515 537
ENSMUSP00000068480 C2H2 ZF 302 324
ENSMUSP00000068480 C2H2 ZF 330 352
ENSMUSP00000068480 C2H2 ZF 358 380
ENSMUSP00000068480 C2H2 ZF 386 408
ENSMUSP00000068480 C2H2 ZF 414 436
ENSMUSP00000068480 C2H2 ZF 442 464
ENSMUSP00000106587 C2H2 ZF 302 324
ENSMUSP00000106587 C2H2 ZF 330 352
ENSMUSP00000106587 C2H2 ZF 358 380
ENSMUSP00000106587 C2H2 ZF 386 408
ENSMUSP00000106587 C2H2 ZF 414 436
ENSMUSP00000106587 C2H2 ZF 442 464
ENSMUSP00000106588 C2H2 ZF 302 324
ENSMUSP00000106588 C2H2 ZF 330 352
ENSMUSP00000106588 C2H2 ZF 358 380
ENSMUSP00000106588 C2H2 ZF 386 408
ENSMUSP00000106588 C2H2 ZF 414 436
ENSMUSP00000106588 C2H2 ZF 442 464

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

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41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action