CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zkscan1
(
Mus musculus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSMUSG00000029729
T101087_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zkscan1
M00771_2.00
Mus musculus
NNNHDHDNNN
NNNHDHDNNN
PBM
Weirauch et al.(2013)
pTH2280
(Direct)
(Direct)
Zkscan1
M08985_2.00
Mus musculus
DVHDBNCCTACTRTGTGCH
DGCACAYAGTAGGNVHDBH
Misc
Kulakovskiy et al.(2013)
ZKSC1_MOUSE.H11MO.0.A
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN1
M05847_2.00
Homo sapiens
NNNCCTACTAHGH
DCDTAGTAGGNNN
SMiLE-seq
Isakova et al.(2017)
ZKSCAN1
0.825
0.993
ZKSCAN1
M08874_2.00
Homo sapiens
DVHDBNCCTACTRTGTGCH
DGCACAYAGTAGGNVHDBH
Misc
Kulakovskiy et al.(2013)
ZKSC1_HUMAN.H11MO.0.B
0.825
0.993
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00771_2.00
C2H2 ZF
16
38
HRCDECGKCFTRSSSLIRHKIIH
M00771_2.00
C2H2 ZF
44
66
YECNECGKAFSLNSNLVLHQRIH
M00771_2.00
C2H2 ZF
72
94
HECNECGKAFSHSSNLILHQRIH
M00771_2.00
C2H2 ZF
100
122
YECNECGKAFSQSSDLTKHQRIH
M00771_2.00
C2H2 ZF
128
150
YECSECGKAFNRNSYLILHRRIH
M00771_2.00
C2H2 ZF
156
178
YKCTKCGKAFTRSSTLTLHHRIH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000019660
C2H2 ZF
375
397
HRCDECGKCFTRSSSLIRHKIIH
ENSMUSP00000019660
C2H2 ZF
403
425
YECNECGKAFSLNSNLVLHQRIH
ENSMUSP00000019660
C2H2 ZF
431
453
HECNECGKAFSHSSNLILHQRIH
ENSMUSP00000019660
C2H2 ZF
459
481
YECNECGKAFSQSSDLTKHQRIH
ENSMUSP00000019660
C2H2 ZF
487
509
YECSECGKAFNRNSYLILHRRIH
ENSMUSP00000019660
C2H2 ZF
515
537
YKCTKCGKAFTRSSTLTLHHRIH
ENSMUSP00000068480
C2H2 ZF
302
324
HRCDECGKCFTRSSSLIRHKIIH
ENSMUSP00000068480
C2H2 ZF
330
352
YECNECGKAFSLNSNLVLHQRIH
ENSMUSP00000068480
C2H2 ZF
358
380
HECNECGKAFSHSSNLILHQRIH
ENSMUSP00000068480
C2H2 ZF
386
408
YECNECGKAFSQSSDLTKHQRIH
ENSMUSP00000068480
C2H2 ZF
414
436
YECSECGKAFNRNSYLILHRRIH
ENSMUSP00000068480
C2H2 ZF
442
464
YKCTKCGKAFTRSSTLTLHHRIH
ENSMUSP00000106587
C2H2 ZF
302
324
HRCDECGKCFTRSSSLIRHKIIH
ENSMUSP00000106587
C2H2 ZF
330
352
YECNECGKAFSLNSNLVLHQRIH
ENSMUSP00000106587
C2H2 ZF
358
380
HECNECGKAFSHSSNLILHQRIH
ENSMUSP00000106587
C2H2 ZF
386
408
YECNECGKAFSQSSDLTKHQRIH
ENSMUSP00000106587
C2H2 ZF
414
436
YECSECGKAFNRNSYLILHRRIH
ENSMUSP00000106587
C2H2 ZF
442
464
YKCTKCGKAFTRSSTLTLHHRIH
ENSMUSP00000106588
C2H2 ZF
302
324
HRCDECGKCFTRSSSLIRHKIIH
ENSMUSP00000106588
C2H2 ZF
330
352
YECNECGKAFSLNSNLVLHQRIH
ENSMUSP00000106588
C2H2 ZF
358
380
HECNECGKAFSHSSNLILHQRIH
ENSMUSP00000106588
C2H2 ZF
386
408
YECNECGKAFSQSSDLTKHQRIH
ENSMUSP00000106588
C2H2 ZF
414
436
YECSECGKAFNRNSYLILHRRIH
ENSMUSP00000106588
C2H2 ZF
442
464
YKCTKCGKAFTRSSTLTLHHRIH
Links
Other
C2H2 ZF
family TFs
Other
Mus musculus
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy