CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Prdm4
(
Mus musculus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSMUSG00000035529
T101128_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene encodes a member of the PR/SET family of zinc finger proteins. This protein has been shown to bind DNA in a sequence-specific manner and has been implicated in neural stem cell proliferation and differentiation. Pseudogenes have been identified on chromosomes 14 and X. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.827
1.000
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.827
1.000
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.827
1.000
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000041942
C2H2 ZF
593
615
WKCSMCPQAFISPSKLHVHFMGH
ENSMUSP00000041942
C2H2 ZF
621
643
HKCDFCSKAFSDPSNLRTHLKIH
ENSMUSP00000041942
C2H2 ZF
649
671
YRCTLCDKSFTQKAHLESHMVIH
ENSMUSP00000041942
C2H2 ZF
677
699
LKCDYCDKLFMRRQDLKQHVLIH
ENSMUSP00000041942
C2H2 ZF
705
727
IKCPKCDKLFLRTNHLKKHLNSH
ENSMUSP00000041942
C2H2 ZF
733
754
YVCEKCTKAYLTKYHLTRHLKT
Links
Other
C2H2 ZF
family TFs
Other
Mus musculus
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy